Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FENDRR (FOXF1 adjacent non-coding developmental regulatory RNA)

Identity

Alias_namesFOXF1-AS1
FOXF1 antisense RNA 1 (head to head)
Alias_symbol (synonym)lincFOXF1
onco-lncRNA-21
Other aliasTCONS_00024240
HGNC (Hugo) FENDRR
LocusID (NCBI) 400550
Atlas_Id 55187
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 86508131 and ends at 86542466 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FENDRR   43894
Cards
Entrez_Gene (NCBI)FENDRR  400550  FOXF1 adjacent non-coding developmental regulatory RNA
AliasesFOXF1-AS1; TCONS_00024240; lincFOXF1; onco-lncRNA-21
GeneCards (Weizmann)FENDRR
Ensembl hg19 (Hinxton)ENSG00000268388 [Gene_View]  chr16:86508131-86542466 [Contig_View]  FENDRR [Vega]
Ensembl hg38 (Hinxton)ENSG00000268388 [Gene_View]  chr16:86508131-86542466 [Contig_View]  FENDRR [Vega]
ICGC DataPortalENSG00000268388
TCGA cBioPortalFENDRR
AceView (NCBI)FENDRR
Genatlas (Paris)FENDRR
WikiGenes400550
SOURCE (Princeton)FENDRR
Genetics Home Reference (NIH)FENDRR
Genomic and cartography
GoldenPath hg19 (UCSC)FENDRR  -     chr16:86508131-86542466 -  16q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FENDRR  -     16q24.1   [Description]    (hg38-Dec_2013)
EnsemblFENDRR - 16q24.1 [CytoView hg19]  FENDRR - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIFENDRR [Mapview hg19]  FENDRR [Mapview hg38]
OMIM614975   
Gene and transcription
Genbank (Entrez)AK091834 AK097312 AL833740 BQ671983 BX538111
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)FENDRR
Cluster EST : UnigeneHs.448825 [ NCBI ]
CGAP (NCI)Hs.448825
Alternative Splicing GalleryENSG00000268388
Gene ExpressionFENDRR [ NCBI-GEO ]   FENDRR [ EBI - ARRAY_EXPRESS ]   FENDRR [ SEEK ]   FENDRR [ MEM ]
Gene Expression Viewer (FireBrowse)FENDRR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400550
GTEX Portal (Tissue expression)FENDRR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FENDRR
DMDM Disease mutations400550
Blocks (Seattle)FENDRR
Human Protein AtlasENSG00000268388
IPIIPI00956034   
Protein Interaction databases
FunCoupENSG00000268388
BioGRIDFENDRR
STRING (EMBL)FENDRR
ZODIACFENDRR
Ontologies - Pathways
Huge Navigator FENDRR [HugePedia]
snp3D : Map Gene to Disease400550
BioCentury BCIQFENDRR
ClinGenFENDRR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400550
Clinical trialFENDRR
Miscellaneous
canSAR (ICR)FENDRR (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFENDRR
EVEXFENDRR
GoPubMedFENDRR
iHOPFENDRR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:06:00 CET 2017

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