Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FENDRR (FOXF1 adjacent non-coding developmental regulatory RNA)

Identity

Alias (NCBI)FOXF1-AS1
FOXF1AS1
TCONS_00024240
lincFOXF1
onco-lncRNA-21
HGNC (Hugo) FENDRR
HGNC Alias symblincFOXF1
onco-lncRNA-21
HGNC Previous nameFOXF1-AS1
HGNC Previous nameFOXF1 antisense RNA 1 (head to head)
LocusID (NCBI) 400550
Atlas_Id 55187
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 86487668 and ends at 86508860 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)FENDRR   43894
Cards
Entrez_Gene (NCBI)FENDRR  400550  FOXF1 adjacent non-coding developmental regulatory RNA
AliasesFOXF1-AS1; FOXF1AS1; TCONS_00024240; lincFOXF1; 
onco-lncRNA-21
GeneCards (Weizmann)FENDRR
Ensembl hg19 (Hinxton)ENSG00000268388 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268388 [Gene_View]  ENSG00000268388 [Sequence]  chr16:86487668-86508860 [Contig_View]  FENDRR [Vega]
ICGC DataPortalENSG00000268388
TCGA cBioPortalFENDRR
AceView (NCBI)FENDRR
Genatlas (Paris)FENDRR
WikiGenes400550
SOURCE (Princeton)FENDRR
Genetics Home Reference (NIH)FENDRR
Genomic and cartography
GoldenPath hg38 (UCSC)FENDRR  -     chr16:86487668-86508860 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FENDRR  -     16q24.1   [Description]    (hg19-Feb_2009)
GoldenPathFENDRR - 16q24.1 [CytoView hg19]  FENDRR - 16q24.1 [CytoView hg38]
ImmunoBaseENSG00000268388
genome Data Viewer NCBIFENDRR [Mapview hg19]  
OMIM614975   
Gene and transcription
Genbank (Entrez)AK091834 AK097312 AL833740 BQ671983 BX538111
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FENDRR
Alternative Splicing GalleryENSG00000268388
Gene ExpressionFENDRR [ NCBI-GEO ]   FENDRR [ EBI - ARRAY_EXPRESS ]   FENDRR [ SEEK ]   FENDRR [ MEM ]
Gene Expression Viewer (FireBrowse)FENDRR [ Firebrowse - Broad ]
GenevisibleExpression of FENDRR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400550
GTEX Portal (Tissue expression)FENDRR
Human Protein AtlasENSG00000268388-FENDRR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FENDRR
DMDM Disease mutations400550
Blocks (Seattle)FENDRR
Human Protein Atlas [tissue]ENSG00000268388-FENDRR [tissue]
IPIIPI00956034   
Protein Interaction databases
FunCoupENSG00000268388
BioGRIDFENDRR
STRING (EMBL)FENDRR
ZODIACFENDRR
Ontologies - Pathways
Huge Navigator FENDRR [HugePedia]
snp3D : Map Gene to Disease400550
BioCentury BCIQFENDRR
ClinGenFENDRR
Clinical trials, drugs, therapy
Protein Interactions : CTD400550
Clinical trialFENDRR
Miscellaneous
canSAR (ICR)FENDRR (select the gene name)
HarmonizomeFENDRR
DataMed IndexFENDRR
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFENDRR
EVEXFENDRR
GoPubMedFENDRR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 14 14:11:18 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.