Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FER1L4 (fer-1 like family member 4, pseudogene)

Identity

Alias_namesC20orf124
fer-1-like 4 (C. elegans)
fer-1-like 4 (C. elegans), pseudogene (functional)
fer-1 like family member 4, pseudogene (functional)
Alias_symbol (synonym)bA563A22B.1
dJ309K20.1
Other alias
HGNC (Hugo) FER1L4
LocusID (NCBI) 80307
Atlas_Id 54998
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 35558737 and ends at 35607562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLU (8p21.1) / FER1L4 (20q11.22)FER1L4 (20q11.22) / ADAM12 (10q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FER1L4   15801
Cards
Entrez_Gene (NCBI)FER1L4  80307  fer-1 like family member 4, pseudogene
AliasesC20orf124
GeneCards (Weizmann)FER1L4
Ensembl hg19 (Hinxton)ENSG00000088340 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088340 [Gene_View]  chr20:35558737-35607562 [Contig_View]  FER1L4 [Vega]
ICGC DataPortalENSG00000088340
TCGA cBioPortalFER1L4
AceView (NCBI)FER1L4
Genatlas (Paris)FER1L4
WikiGenes80307
SOURCE (Princeton)FER1L4
Genetics Home Reference (NIH)FER1L4
Genomic and cartography
GoldenPath hg38 (UCSC)FER1L4  -     chr20:35558737-35607562 -  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FER1L4  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblFER1L4 - 20q11.22 [CytoView hg19]  FER1L4 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIFER1L4 [Mapview hg19]  FER1L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF218012 AF218030 AI219207 AI440245 AI741534
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FER1L4
Cluster EST : UnigeneHs.72222 [ NCBI ]
CGAP (NCI)Hs.72222
Alternative Splicing GalleryENSG00000088340
Gene ExpressionFER1L4 [ NCBI-GEO ]   FER1L4 [ EBI - ARRAY_EXPRESS ]   FER1L4 [ SEEK ]   FER1L4 [ MEM ]
Gene Expression Viewer (FireBrowse)FER1L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80307
GTEX Portal (Tissue expression)FER1L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA9Z1Z3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA9Z1Z3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA9Z1Z3
Splice isoforms : SwissVarA9Z1Z3
PhosPhoSitePlusA9Z1Z3
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Fer1l4    FerIin_dom    Ferlin_B-domain    Ferlin_C   
Domain families : Pfam (Sanger)C2 (PF00168)    FerB (PF08150)    FerI (PF08151)    Ferlin_C (PF16165)   
Domain families : Pfam (NCBI)pfam00168    pfam08150    pfam08151    pfam16165   
Domain families : Smart (EMBL)C2 (SM00239)  FerB (SM01201)  FerI (SM01202)  
Conserved Domain (NCBI)FER1L4
DMDM Disease mutations80307
Blocks (Seattle)FER1L4
SuperfamilyA9Z1Z3
Human Protein AtlasENSG00000088340
Peptide AtlasA9Z1Z3
IPIIPI00795736   IPI00020293   IPI00255836   IPI00743180   IPI00939401   
Protein Interaction databases
DIP (DOE-UCLA)A9Z1Z3
IntAct (EBI)A9Z1Z3
FunCoupENSG00000088340
BioGRIDFER1L4
STRING (EMBL)FER1L4
ZODIACFER1L4
Ontologies - Pathways
QuickGOA9Z1Z3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFER1L4
Atlas of Cancer Signalling NetworkFER1L4
Wikipedia pathwaysFER1L4
Orthology - Evolution
OrthoDB80307
GeneTree (enSembl)ENSG00000088340
Phylogenetic Trees/Animal Genes : TreeFamFER1L4
HOVERGENA9Z1Z3
HOGENOMA9Z1Z3
Homologs : HomoloGeneFER1L4
Homology/Alignments : Family Browser (UCSC)FER1L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFER1L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FER1L4
dbVarFER1L4
ClinVarFER1L4
1000_GenomesFER1L4 
Exome Variant ServerFER1L4
ExAC (Exome Aggregation Consortium)FER1L4 (select the gene name)
Genetic variants : HAPMAP80307
Genomic Variants (DGV)FER1L4 [DGVbeta]
DECIPHERFER1L4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFER1L4 
Mutations
ICGC Data PortalFER1L4 
TCGA Data PortalFER1L4 
Broad Tumor PortalFER1L4
OASIS PortalFER1L4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFER1L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FER1L4
DgiDB (Drug Gene Interaction Database)FER1L4
DoCM (Curated mutations)FER1L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FER1L4 (select a term)
intoGenFER1L4
Cancer3DFER1L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFER1L4
Genetic Testing Registry FER1L4
NextProtA9Z1Z3 [Medical]
TSGene80307
GENETestsFER1L4
Target ValidationFER1L4
Huge Navigator FER1L4 [HugePedia]
snp3D : Map Gene to Disease80307
BioCentury BCIQFER1L4
ClinGenFER1L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80307
Chemical/Pharm GKB GenePA28097
Clinical trialFER1L4
Miscellaneous
canSAR (ICR)FER1L4 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFER1L4
EVEXFER1L4
GoPubMedFER1L4
iHOPFER1L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:48 CEST 2017

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