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FER1L5 (fer-1 like family member 5)

Identity

Alias_namesfer-1-like 5 (C. elegans)
Alias_symbol (synonym)DKFZp434I0121
Other alias-
HGNC (Hugo) FER1L5
LocusID (NCBI) 90342
Atlas_Id 54317
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96642737 and ends at 96704885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KMT2A (11q23.3) / FER1L5 (2q11.2)LMAN2L (2q11.2) / FER1L5 (2q11.2)MCMBP (10q26.11) / FER1L5 (2q11.2)
LMAN2L 2q11.2 / FER1L5 2q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FER1L5   19044
Cards
Entrez_Gene (NCBI)FER1L5  90342  fer-1 like family member 5
Aliases
GeneCards (Weizmann)FER1L5
Ensembl hg19 (Hinxton)ENSG00000249715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249715 [Gene_View]  chr2:96642737-96704885 [Contig_View]  FER1L5 [Vega]
ICGC DataPortalENSG00000249715
TCGA cBioPortalFER1L5
AceView (NCBI)FER1L5
Genatlas (Paris)FER1L5
WikiGenes90342
SOURCE (Princeton)FER1L5
Genetics Home Reference (NIH)FER1L5
Genomic and cartography
GoldenPath hg38 (UCSC)FER1L5  -     chr2:96642737-96704885 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FER1L5  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblFER1L5 - 2q11.2 [CytoView hg19]  FER1L5 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIFER1L5 [Mapview hg19]  FER1L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126032 AL133022 AY461813 BC117324 BC126368
RefSeq transcript (Entrez)NM_001077400 NM_001113382 NM_001293083
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FER1L5
Cluster EST : UnigeneHs.534025 [ NCBI ]
CGAP (NCI)Hs.534025
Alternative Splicing GalleryENSG00000249715
Gene ExpressionFER1L5 [ NCBI-GEO ]   FER1L5 [ EBI - ARRAY_EXPRESS ]   FER1L5 [ SEEK ]   FER1L5 [ MEM ]
Gene Expression Viewer (FireBrowse)FER1L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90342
GTEX Portal (Tissue expression)FER1L5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0AVI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0AVI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0AVI2
Splice isoforms : SwissVarA0AVI2
PhosPhoSitePlusA0AVI2
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Fer1L5    FerIin_dom    Ferlin_A-domain    Ferlin_B-domain    Ferlin_C    Peroxin/Ferlin   
Domain families : Pfam (Sanger)C2 (PF00168)    FerA (PF08165)    FerB (PF08150)    Ferlin_C (PF16165)   
Domain families : Pfam (NCBI)pfam00168    pfam08165    pfam08150    pfam16165   
Domain families : Smart (EMBL)C2 (SM00239)  DysFC (SM00694)  DysFN (SM00693)  FerA (SM01200)  FerB (SM01201)  FerI (SM01202)  
Conserved Domain (NCBI)FER1L5
DMDM Disease mutations90342
Blocks (Seattle)FER1L5
SuperfamilyA0AVI2
Human Protein AtlasENSG00000249715
Peptide AtlasA0AVI2
IPIIPI00883989   IPI00941524   IPI00738284   IPI01009780   
Protein Interaction databases
DIP (DOE-UCLA)A0AVI2
IntAct (EBI)A0AVI2
FunCoupENSG00000249715
BioGRIDFER1L5
STRING (EMBL)FER1L5
ZODIACFER1L5
Ontologies - Pathways
QuickGOA0AVI2
Ontology : AmiGOplasma membrane  myoblast fusion  integral component of membrane  
Ontology : EGO-EBIplasma membrane  myoblast fusion  integral component of membrane  
NDEx NetworkFER1L5
Atlas of Cancer Signalling NetworkFER1L5
Wikipedia pathwaysFER1L5
Orthology - Evolution
OrthoDB90342
GeneTree (enSembl)ENSG00000249715
Phylogenetic Trees/Animal Genes : TreeFamFER1L5
HOVERGENA0AVI2
HOGENOMA0AVI2
Homologs : HomoloGeneFER1L5
Homology/Alignments : Family Browser (UCSC)FER1L5
Gene fusions - Rearrangements
Fusion : MitelmanLMAN2L/FER1L5 [2q11.2/2q11.2]  [t(2;2)(q11;q11)]  
Fusion: TCGALMAN2L 2q11.2 FER1L5 2q11.2 LUSC
Fusion Cancer (Beijing)MCMBP [10q26.11]  -  FER1L5 [2q11.2]  [FUSC004266]  [FUSC004266]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFER1L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FER1L5
dbVarFER1L5
ClinVarFER1L5
1000_GenomesFER1L5 
Exome Variant ServerFER1L5
ExAC (Exome Aggregation Consortium)FER1L5 (select the gene name)
Genetic variants : HAPMAP90342
Genomic Variants (DGV)FER1L5 [DGVbeta]
DECIPHERFER1L5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFER1L5 
Mutations
ICGC Data PortalFER1L5 
TCGA Data PortalFER1L5 
Broad Tumor PortalFER1L5
OASIS PortalFER1L5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFER1L5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFER1L5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FER1L5
DgiDB (Drug Gene Interaction Database)FER1L5
DoCM (Curated mutations)FER1L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FER1L5 (select a term)
intoGenFER1L5
Cancer3DFER1L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFER1L5
Genetic Testing Registry FER1L5
NextProtA0AVI2 [Medical]
TSGene90342
GENETestsFER1L5
Target ValidationFER1L5
Huge Navigator FER1L5 [HugePedia]
snp3D : Map Gene to Disease90342
BioCentury BCIQFER1L5
ClinGenFER1L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90342
Chemical/Pharm GKB GenePA142671764
Clinical trialFER1L5
Miscellaneous
canSAR (ICR)FER1L5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFER1L5
EVEXFER1L5
GoPubMedFER1L5
iHOPFER1L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:08:20 CEST 2017

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