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FERD3L (Fer3 like bHLH transcription factor)

Identity

Alias_namesFer3-like (Drosophila)
Fer3-like bHLH transcription factor
Alias_symbol (synonym)NATO3
N-TWIST
bHLHa31
Other aliasNTWIST
PTFB
HGNC (Hugo) FERD3L
LocusID (NCBI) 222894
Atlas_Id 63361
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 19144782 and ends at 19145421 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FERD3L   16660
Cards
Entrez_Gene (NCBI)FERD3L  222894  Fer3 like bHLH transcription factor
AliasesN-TWIST; NATO3; NTWIST; PTFB; 
bHLHa31
GeneCards (Weizmann)FERD3L
Ensembl hg19 (Hinxton)ENSG00000146618 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146618 [Gene_View]  chr7:19144782-19145421 [Contig_View]  FERD3L [Vega]
ICGC DataPortalENSG00000146618
TCGA cBioPortalFERD3L
AceView (NCBI)FERD3L
Genatlas (Paris)FERD3L
WikiGenes222894
SOURCE (Princeton)FERD3L
Genetics Home Reference (NIH)FERD3L
Genomic and cartography
GoldenPath hg38 (UCSC)FERD3L  -     chr7:19144782-19145421 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FERD3L  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblFERD3L - 7p21.1 [CytoView hg19]  FERD3L - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBIFERD3L [Mapview hg19]  FERD3L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF517122 BC069147 BC101135 BC101136 BC101137
RefSeq transcript (Entrez)NM_152898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FERD3L
Cluster EST : UnigeneHs.592168 [ NCBI ]
CGAP (NCI)Hs.592168
Alternative Splicing GalleryENSG00000146618
Gene ExpressionFERD3L [ NCBI-GEO ]   FERD3L [ EBI - ARRAY_EXPRESS ]   FERD3L [ SEEK ]   FERD3L [ MEM ]
Gene Expression Viewer (FireBrowse)FERD3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222894
GTEX Portal (Tissue expression)FERD3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RJ6
Splice isoforms : SwissVarQ96RJ6
PhosPhoSitePlusQ96RJ6
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)FERD3L
DMDM Disease mutations222894
Blocks (Seattle)FERD3L
SuperfamilyQ96RJ6
Human Protein AtlasENSG00000146618
Peptide AtlasQ96RJ6
HPRD16890
IPIIPI00658037   
Protein Interaction databases
DIP (DOE-UCLA)Q96RJ6
IntAct (EBI)Q96RJ6
FunCoupENSG00000146618
BioGRIDFERD3L
STRING (EMBL)FERD3L
ZODIACFERD3L
Ontologies - Pathways
QuickGOQ96RJ6
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  protein binding  nucleus  transcription, DNA-templated  floor plate development  negative regulation of transcription, DNA-templated  protein dimerization activity  cell development  regulation of neurogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  protein binding  nucleus  transcription, DNA-templated  floor plate development  negative regulation of transcription, DNA-templated  protein dimerization activity  cell development  regulation of neurogenesis  
NDEx NetworkFERD3L
Atlas of Cancer Signalling NetworkFERD3L
Wikipedia pathwaysFERD3L
Orthology - Evolution
OrthoDB222894
GeneTree (enSembl)ENSG00000146618
Phylogenetic Trees/Animal Genes : TreeFamFERD3L
HOVERGENQ96RJ6
HOGENOMQ96RJ6
Homologs : HomoloGeneFERD3L
Homology/Alignments : Family Browser (UCSC)FERD3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFERD3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FERD3L
dbVarFERD3L
ClinVarFERD3L
1000_GenomesFERD3L 
Exome Variant ServerFERD3L
ExAC (Exome Aggregation Consortium)FERD3L (select the gene name)
Genetic variants : HAPMAP222894
Genomic Variants (DGV)FERD3L [DGVbeta]
DECIPHERFERD3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFERD3L 
Mutations
ICGC Data PortalFERD3L 
TCGA Data PortalFERD3L 
Broad Tumor PortalFERD3L
OASIS PortalFERD3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFERD3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFERD3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FERD3L
DgiDB (Drug Gene Interaction Database)FERD3L
DoCM (Curated mutations)FERD3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FERD3L (select a term)
intoGenFERD3L
Cancer3DFERD3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFERD3L
Genetic Testing Registry FERD3L
NextProtQ96RJ6 [Medical]
TSGene222894
GENETestsFERD3L
Target ValidationFERD3L
Huge Navigator FERD3L [HugePedia]
snp3D : Map Gene to Disease222894
BioCentury BCIQFERD3L
ClinGenFERD3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222894
Chemical/Pharm GKB GenePA134973730
Clinical trialFERD3L
Miscellaneous
canSAR (ICR)FERD3L (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFERD3L
EVEXFERD3L
GoPubMedFERD3L
iHOPFERD3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:26 CEST 2017

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