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FERMT3 (fermitin family member 3)

Identity

Alias_namesfermitin family homolog 3 (Drosophila)
Alias_symbol (synonym)URP2
KIND3
MIG2B
MGC10966
MIG-2
UNC112C
Other aliasURP2SF
HGNC (Hugo) FERMT3
LocusID (NCBI) 83706
Atlas_Id 53989
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63974152 and ends at 63991363 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FERMT3   23151
LRG (Locus Reference Genomic)LRG_180
Cards
Entrez_Gene (NCBI)FERMT3  83706  fermitin family member 3
AliasesKIND3; MIG-2; MIG2B; UNC112C; 
URP2; URP2SF
GeneCards (Weizmann)FERMT3
Ensembl hg19 (Hinxton)ENSG00000149781 [Gene_View]  chr11:63974152-63991363 [Contig_View]  FERMT3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149781 [Gene_View]  chr11:63974152-63991363 [Contig_View]  FERMT3 [Vega]
ICGC DataPortalENSG00000149781
TCGA cBioPortalFERMT3
AceView (NCBI)FERMT3
Genatlas (Paris)FERMT3
WikiGenes83706
SOURCE (Princeton)FERMT3
Genetics Home Reference (NIH)FERMT3
Genomic and cartography
GoldenPath hg19 (UCSC)FERMT3  -     chr11:63974152-63991363 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FERMT3  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblFERMT3 - 11q13.1 [CytoView hg19]  FERMT3 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIFERMT3 [Mapview hg19]  FERMT3 [Mapview hg38]
OMIM607901   612840   
Gene and transcription
Genbank (Entrez)AK093719 AL560215 AY093951 AY093952 BC004347
RefSeq transcript (Entrez)NM_031471 NM_178443
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_016360 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)FERMT3
Cluster EST : UnigeneHs.180535 [ NCBI ]
CGAP (NCI)Hs.180535
Alternative Splicing GalleryENSG00000149781
Gene ExpressionFERMT3 [ NCBI-GEO ]   FERMT3 [ EBI - ARRAY_EXPRESS ]   FERMT3 [ SEEK ]   FERMT3 [ MEM ]
Gene Expression Viewer (FireBrowse)FERMT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83706
GTEX Portal (Tissue expression)FERMT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UX7
Splice isoforms : SwissVarQ86UX7
PhosPhoSitePlusQ86UX7
Domaine pattern : Prosite (Expaxy)FERM_2 (PS00661)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Band_41_domain    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)FERM_M (PF00373)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam00373    pfam00169   
Domain families : Smart (EMBL)B41 (SM00295)  PH (SM00233)  
Conserved Domain (NCBI)FERMT3
DMDM Disease mutations83706
Blocks (Seattle)FERMT3
PDB (SRS)2YS3   
PDB (PDBSum)2YS3   
PDB (IMB)2YS3   
PDB (RSDB)2YS3   
Structural Biology KnowledgeBase2YS3   
SCOP (Structural Classification of Proteins)2YS3   
CATH (Classification of proteins structures)2YS3   
SuperfamilyQ86UX7
Human Protein AtlasENSG00000149781
Peptide AtlasQ86UX7
HPRD07440
IPIIPI00397834   IPI00216699   IPI01012462   IPI01012119   IPI01009305   
Protein Interaction databases
DIP (DOE-UCLA)Q86UX7
IntAct (EBI)Q86UX7
FunCoupENSG00000149781
BioGRIDFERMT3
STRING (EMBL)FERMT3
ZODIACFERMT3
Ontologies - Pathways
QuickGOQ86UX7
Ontology : AmiGOpodosome  integrin binding  leukocyte cell-cell adhesion  integrin-mediated signaling pathway  membrane  cell junction  positive regulation of cell migration  integrin activation  integrin activation  regulation of cell-cell adhesion mediated by integrin  substrate adhesion-dependent cell spreading  cell projection  extracellular exosome  platelet aggregation  platelet aggregation  
Ontology : EGO-EBIpodosome  integrin binding  leukocyte cell-cell adhesion  integrin-mediated signaling pathway  membrane  cell junction  positive regulation of cell migration  integrin activation  integrin activation  regulation of cell-cell adhesion mediated by integrin  substrate adhesion-dependent cell spreading  cell projection  extracellular exosome  platelet aggregation  platelet aggregation  
NDEx NetworkFERMT3
Atlas of Cancer Signalling NetworkFERMT3
Wikipedia pathwaysFERMT3
Orthology - Evolution
OrthoDB83706
GeneTree (enSembl)ENSG00000149781
Phylogenetic Trees/Animal Genes : TreeFamFERMT3
HOVERGENQ86UX7
HOGENOMQ86UX7
Homologs : HomoloGeneFERMT3
Homology/Alignments : Family Browser (UCSC)FERMT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFERMT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FERMT3
dbVarFERMT3
ClinVarFERMT3
1000_GenomesFERMT3 
Exome Variant ServerFERMT3
ExAC (Exome Aggregation Consortium)FERMT3 (select the gene name)
Genetic variants : HAPMAP83706
Genomic Variants (DGV)FERMT3 [DGVbeta]
DECIPHER (Syndromes)11:63974152-63991363  ENSG00000149781
CONAN: Copy Number AnalysisFERMT3 
Mutations
ICGC Data PortalFERMT3 
TCGA Data PortalFERMT3 
Broad Tumor PortalFERMT3
OASIS PortalFERMT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFERMT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFERMT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch FERMT3
DgiDB (Drug Gene Interaction Database)FERMT3
DoCM (Curated mutations)FERMT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FERMT3 (select a term)
intoGenFERMT3
Cancer3DFERMT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607901    612840   
Orphanet14417   
MedgenFERMT3
Genetic Testing Registry FERMT3
NextProtQ86UX7 [Medical]
TSGene83706
GENETestsFERMT3
Huge Navigator FERMT3 [HugePedia]
snp3D : Map Gene to Disease83706
BioCentury BCIQFERMT3
ClinGenFERMT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83706
Chemical/Pharm GKB GenePA162388384
Clinical trialFERMT3
Miscellaneous
canSAR (ICR)FERMT3 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFERMT3
EVEXFERMT3
GoPubMedFERMT3
iHOPFERMT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:06:01 CET 2017

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