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FETUB (fetuin B)

Identity

Other alias16G2
Gugu
IRL685
HGNC (Hugo) FETUB
LocusID (NCBI) 26998
Atlas_Id 63362
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 186640360 and ends at 186653008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FETUB   3658
Cards
Entrez_Gene (NCBI)FETUB  26998  fetuin B
Aliases16G2; Gugu; IRL685
GeneCards (Weizmann)FETUB
Ensembl hg19 (Hinxton)ENSG00000090512 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090512 [Gene_View]  chr3:186640360-186653008 [Contig_View]  FETUB [Vega]
ICGC DataPortalENSG00000090512
TCGA cBioPortalFETUB
AceView (NCBI)FETUB
Genatlas (Paris)FETUB
WikiGenes26998
SOURCE (Princeton)FETUB
Genetics Home Reference (NIH)FETUB
Genomic and cartography
GoldenPath hg38 (UCSC)FETUB  -     chr3:186640360-186653008 +  3q27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FETUB  -     3q27.3   [Description]    (hg19-Feb_2009)
EnsemblFETUB - 3q27.3 [CytoView hg19]  FETUB - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBIFETUB [Mapview hg19]  FETUB [Mapview hg38]
OMIM605954   
Gene and transcription
Genbank (Entrez)AB017551 AF534529 AJ242928 AK303859 AK309647
RefSeq transcript (Entrez)NM_001308077 NM_001308079 NM_014375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FETUB
Cluster EST : UnigeneHs.81073 [ NCBI ]
CGAP (NCI)Hs.81073
Alternative Splicing GalleryENSG00000090512
Gene ExpressionFETUB [ NCBI-GEO ]   FETUB [ EBI - ARRAY_EXPRESS ]   FETUB [ SEEK ]   FETUB [ MEM ]
Gene Expression Viewer (FireBrowse)FETUB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26998
GTEX Portal (Tissue expression)FETUB
Human Protein AtlasENSG00000090512-FETUB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGM5
Splice isoforms : SwissVarQ9UGM5
PhosPhoSitePlusQ9UGM5
Domaine pattern : Prosite (Expaxy)CYSTATIN_FETUIN_B (PS51530)    FETUIN_1 (PS01254)    FETUIN_2 (PS01255)   
Domains : Interpro (EBI)Cystatin_dom    Cystatin_Fetuin_B    Prot_inh_fetuin_CS   
Domain families : Pfam (Sanger)Cystatin (PF00031)   
Domain families : Pfam (NCBI)pfam00031   
Domain families : Smart (EMBL)CY (SM00043)  
Conserved Domain (NCBI)FETUB
DMDM Disease mutations26998
Blocks (Seattle)FETUB
SuperfamilyQ9UGM5
Human Protein Atlas [tissue]ENSG00000090512-FETUB [tissue]
Peptide AtlasQ9UGM5
HPRD09335
IPIIPI00743766   IPI00924616   IPI00925428   IPI00553061   IPI00552199   IPI00792024   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGM5
IntAct (EBI)Q9UGM5
FunCoupENSG00000090512
BioGRIDFETUB
STRING (EMBL)FETUB
ZODIACFETUB
Ontologies - Pathways
QuickGOQ9UGM5
Ontology : AmiGOmolecular_function  cysteine-type endopeptidase inhibitor activity  extracellular region  extracellular space  single fertilization  binding of sperm to zona pellucida  binding of sperm to zona pellucida  biological_process  metalloendopeptidase inhibitor activity  metalloendopeptidase inhibitor activity  negative regulation of endopeptidase activity  extracellular exosome  
Ontology : EGO-EBImolecular_function  cysteine-type endopeptidase inhibitor activity  extracellular region  extracellular space  single fertilization  binding of sperm to zona pellucida  binding of sperm to zona pellucida  biological_process  metalloendopeptidase inhibitor activity  metalloendopeptidase inhibitor activity  negative regulation of endopeptidase activity  extracellular exosome  
NDEx NetworkFETUB
Atlas of Cancer Signalling NetworkFETUB
Wikipedia pathwaysFETUB
Orthology - Evolution
OrthoDB26998
GeneTree (enSembl)ENSG00000090512
Phylogenetic Trees/Animal Genes : TreeFamFETUB
HOVERGENQ9UGM5
HOGENOMQ9UGM5
Homologs : HomoloGeneFETUB
Homology/Alignments : Family Browser (UCSC)FETUB
Gene fusions - Rearrangements
Tumor Fusion PortalFETUB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFETUB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FETUB
dbVarFETUB
ClinVarFETUB
1000_GenomesFETUB 
Exome Variant ServerFETUB
ExAC (Exome Aggregation Consortium)ENSG00000090512
GNOMAD BrowserENSG00000090512
Genetic variants : HAPMAP26998
Genomic Variants (DGV)FETUB [DGVbeta]
DECIPHERFETUB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFETUB 
Mutations
ICGC Data PortalFETUB 
TCGA Data PortalFETUB 
Broad Tumor PortalFETUB
OASIS PortalFETUB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFETUB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFETUB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FETUB
DgiDB (Drug Gene Interaction Database)FETUB
DoCM (Curated mutations)FETUB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FETUB (select a term)
intoGenFETUB
Cancer3DFETUB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605954   
Orphanet
DisGeNETFETUB
MedgenFETUB
Genetic Testing Registry FETUB
NextProtQ9UGM5 [Medical]
TSGene26998
GENETestsFETUB
Target ValidationFETUB
Huge Navigator FETUB [HugePedia]
snp3D : Map Gene to Disease26998
BioCentury BCIQFETUB
ClinGenFETUB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26998
Chemical/Pharm GKB GenePA28099
Clinical trialFETUB
Miscellaneous
canSAR (ICR)FETUB (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFETUB
EVEXFETUB
GoPubMedFETUB
iHOPFETUB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:07:28 CET 2017

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