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FEZF1 (FEZ family zinc finger 1)

Identity

Alias_namesZNF312B
zinc finger protein 312B
Other aliasFEZ
HH22
HGNC (Hugo) FEZF1
LocusID (NCBI) 389549
Atlas_Id 50932
Location 7q31.32  [Link to chromosome band 7q31]
Location_base_pair Starts at 122301309 and ends at 122304511 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FEZF1   22788
Cards
Entrez_Gene (NCBI)FEZF1  389549  FEZ family zinc finger 1
AliasesFEZ; HH22; ZNF312B
GeneCards (Weizmann)FEZF1
Ensembl hg19 (Hinxton)ENSG00000128610 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128610 [Gene_View]  chr7:122301309-122304511 [Contig_View]  FEZF1 [Vega]
ICGC DataPortalENSG00000128610
TCGA cBioPortalFEZF1
AceView (NCBI)FEZF1
Genatlas (Paris)FEZF1
WikiGenes389549
SOURCE (Princeton)FEZF1
Genetics Home Reference (NIH)FEZF1
Genomic and cartography
GoldenPath hg38 (UCSC)FEZF1  -     chr7:122301309-122304511 -  7q31.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FEZF1  -     7q31.32   [Description]    (hg19-Feb_2009)
EnsemblFEZF1 - 7q31.32 [CytoView hg19]  FEZF1 - 7q31.32 [CytoView hg38]
Mapping of homologs : NCBIFEZF1 [Mapview hg19]  FEZF1 [Mapview hg38]
OMIM146110   613301   616030   
Gene and transcription
Genbank (Entrez)AK300742 AY726588 BC127714 BC127715 BC136684
RefSeq transcript (Entrez)NM_001024613 NM_001160264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FEZF1
Cluster EST : UnigeneHs.553970 [ NCBI ]
CGAP (NCI)Hs.553970
Alternative Splicing GalleryENSG00000128610
Gene ExpressionFEZF1 [ NCBI-GEO ]   FEZF1 [ EBI - ARRAY_EXPRESS ]   FEZF1 [ SEEK ]   FEZF1 [ MEM ]
Gene Expression Viewer (FireBrowse)FEZF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389549
GTEX Portal (Tissue expression)FEZF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJY2
Splice isoforms : SwissVarA0PJY2
PhosPhoSitePlusA0PJY2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)FEZF1
DMDM Disease mutations389549
Blocks (Seattle)FEZF1
SuperfamilyA0PJY2
Human Protein AtlasENSG00000128610
Peptide AtlasA0PJY2
HPRD18614
IPIIPI00376675   IPI00816263   IPI00852828   IPI00941138   
Protein Interaction databases
DIP (DOE-UCLA)A0PJY2
IntAct (EBI)A0PJY2
FunCoupENSG00000128610
BioGRIDFEZF1
STRING (EMBL)FEZF1
ZODIACFEZF1
Ontologies - Pathways
QuickGOA0PJY2
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  neuron migration  nucleus  cytosol  transcription, DNA-templated  axon guidance  negative regulation of cell proliferation  olfactory bulb development  forebrain anterior/posterior pattern specification  positive regulation of neuron differentiation  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  neuron migration  nucleus  cytosol  transcription, DNA-templated  axon guidance  negative regulation of cell proliferation  olfactory bulb development  forebrain anterior/posterior pattern specification  positive regulation of neuron differentiation  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkFEZF1
Atlas of Cancer Signalling NetworkFEZF1
Wikipedia pathwaysFEZF1
Orthology - Evolution
OrthoDB389549
GeneTree (enSembl)ENSG00000128610
Phylogenetic Trees/Animal Genes : TreeFamFEZF1
HOVERGENA0PJY2
HOGENOMA0PJY2
Homologs : HomoloGeneFEZF1
Homology/Alignments : Family Browser (UCSC)FEZF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFEZF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FEZF1
dbVarFEZF1
ClinVarFEZF1
1000_GenomesFEZF1 
Exome Variant ServerFEZF1
ExAC (Exome Aggregation Consortium)FEZF1 (select the gene name)
Genetic variants : HAPMAP389549
Genomic Variants (DGV)FEZF1 [DGVbeta]
DECIPHERFEZF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFEZF1 
Mutations
ICGC Data PortalFEZF1 
TCGA Data PortalFEZF1 
Broad Tumor PortalFEZF1
OASIS PortalFEZF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFEZF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFEZF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FEZF1
DgiDB (Drug Gene Interaction Database)FEZF1
DoCM (Curated mutations)FEZF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FEZF1 (select a term)
intoGenFEZF1
Cancer3DFEZF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146110    613301    616030   
Orphanet3249   
MedgenFEZF1
Genetic Testing Registry FEZF1
NextProtA0PJY2 [Medical]
TSGene389549
GENETestsFEZF1
Huge Navigator FEZF1 [HugePedia]
snp3D : Map Gene to Disease389549
BioCentury BCIQFEZF1
ClinGenFEZF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389549
Chemical/Pharm GKB GenePA162388419
Clinical trialFEZF1
Miscellaneous
canSAR (ICR)FEZF1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFEZF1
EVEXFEZF1
GoPubMedFEZF1
iHOPFEZF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:54 CEST 2017

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