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FGF11 (fibroblast growth factor 11)

Identity

Alias_symbol (synonym)FHF3
FLJ16061
MGC45269
MGC102953
Other aliasFGF-11
FHF-3
HGNC (Hugo) FGF11
LocusID (NCBI) 2256
Atlas_Id 40551
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7440742 and ends at 7444932 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FGF11 (17p13.1) / FGF11 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FGF11   3667
Cards
Entrez_Gene (NCBI)FGF11  2256  fibroblast growth factor 11
AliasesFGF-11; FHF-3; FHF3
GeneCards (Weizmann)FGF11
Ensembl hg19 (Hinxton)ENSG00000161958 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161958 [Gene_View]  chr17:7440742-7444932 [Contig_View]  FGF11 [Vega]
ICGC DataPortalENSG00000161958
TCGA cBioPortalFGF11
AceView (NCBI)FGF11
Genatlas (Paris)FGF11
WikiGenes2256
SOURCE (Princeton)FGF11
Genetics Home Reference (NIH)FGF11
Genomic and cartography
GoldenPath hg38 (UCSC)FGF11  -     chr17:7440742-7444932 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FGF11  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblFGF11 - 17p13.1 [CytoView hg19]  FGF11 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIFGF11 [Mapview hg19]  FGF11 [Mapview hg38]
OMIM601514   
Gene and transcription
Genbank (Entrez)AB209390 AK293131 AK308477 AK308812 AK311269
RefSeq transcript (Entrez)NM_001303460 NM_004112
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FGF11
Cluster EST : UnigeneHs.655193 [ NCBI ]
CGAP (NCI)Hs.655193
Alternative Splicing GalleryENSG00000161958
Gene ExpressionFGF11 [ NCBI-GEO ]   FGF11 [ EBI - ARRAY_EXPRESS ]   FGF11 [ SEEK ]   FGF11 [ MEM ]
Gene Expression Viewer (FireBrowse)FGF11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2256
GTEX Portal (Tissue expression)FGF11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92914   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92914  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92914
Splice isoforms : SwissVarQ92914
PhosPhoSitePlusQ92914
Domaine pattern : Prosite (Expaxy)HBGF_FGF (PS00247)   
Domains : Interpro (EBI)FGF11    Fibroblast_GF_fam    IL1/FGF   
Domain families : Pfam (Sanger)FGF (PF00167)   
Domain families : Pfam (NCBI)pfam00167   
Domain families : Smart (EMBL)FGF (SM00442)  
Conserved Domain (NCBI)FGF11
DMDM Disease mutations2256
Blocks (Seattle)FGF11
SuperfamilyQ92914
Human Protein AtlasENSG00000161958
Peptide AtlasQ92914
HPRD03304
IPIIPI00024252   IPI00555871   
Protein Interaction databases
DIP (DOE-UCLA)Q92914
IntAct (EBI)Q92914
FunCoupENSG00000161958
BioGRIDFGF11
STRING (EMBL)FGF11
ZODIACFGF11
Ontologies - Pathways
QuickGOQ92914
Ontology : AmiGOextracellular region  signal transduction  cell-cell signaling  nervous system development  growth factor activity  
Ontology : EGO-EBIextracellular region  signal transduction  cell-cell signaling  nervous system development  growth factor activity  
Pathways : KEGGMAPK signaling pathway    Ras signaling pathway    Rap1 signaling pathway    PI3K-Akt signaling pathway    Regulation of actin cytoskeleton    Pathways in cancer    Proteoglycans in cancer    Melanoma   
NDEx NetworkFGF11
Atlas of Cancer Signalling NetworkFGF11
Wikipedia pathwaysFGF11
Orthology - Evolution
OrthoDB2256
GeneTree (enSembl)ENSG00000161958
Phylogenetic Trees/Animal Genes : TreeFamFGF11
HOVERGENQ92914
HOGENOMQ92914
Homologs : HomoloGeneFGF11
Homology/Alignments : Family Browser (UCSC)FGF11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGF11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGF11
dbVarFGF11
ClinVarFGF11
1000_GenomesFGF11 
Exome Variant ServerFGF11
ExAC (Exome Aggregation Consortium)FGF11 (select the gene name)
Genetic variants : HAPMAP2256
Genomic Variants (DGV)FGF11 [DGVbeta]
DECIPHERFGF11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFGF11 
Mutations
ICGC Data PortalFGF11 
TCGA Data PortalFGF11 
Broad Tumor PortalFGF11
OASIS PortalFGF11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGF11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFGF11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGF11
DgiDB (Drug Gene Interaction Database)FGF11
DoCM (Curated mutations)FGF11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGF11 (select a term)
intoGenFGF11
Cancer3DFGF11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601514   
Orphanet
MedgenFGF11
Genetic Testing Registry FGF11
NextProtQ92914 [Medical]
TSGene2256
GENETestsFGF11
Huge Navigator FGF11 [HugePedia]
snp3D : Map Gene to Disease2256
BioCentury BCIQFGF11
ClinGenFGF11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2256
Chemical/Pharm GKB GenePA28107
Clinical trialFGF11
Miscellaneous
canSAR (ICR)FGF11 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGF11
EVEXFGF11
GoPubMedFGF11
iHOPFGF11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:56 CEST 2017

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