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FGF17 (fibroblast growth factor 17)

Identity

Alias_symbol (synonym)FGF-13
Other aliasFGF-17
HH20
HGNC (Hugo) FGF17
LocusID (NCBI) 8822
Atlas_Id 40556
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22042753 and ends at 22048808 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FGF17   3673
Cards
Entrez_Gene (NCBI)FGF17  8822  fibroblast growth factor 17
AliasesFGF-13; FGF-17; HH20
GeneCards (Weizmann)FGF17
Ensembl hg19 (Hinxton)ENSG00000158815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158815 [Gene_View]  chr8:22042753-22048808 [Contig_View]  FGF17 [Vega]
ICGC DataPortalENSG00000158815
TCGA cBioPortalFGF17
AceView (NCBI)FGF17
Genatlas (Paris)FGF17
WikiGenes8822
SOURCE (Princeton)FGF17
Genetics Home Reference (NIH)FGF17
Genomic and cartography
GoldenPath hg38 (UCSC)FGF17  -     chr8:22042753-22048808 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FGF17  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblFGF17 - 8p21.3 [CytoView hg19]  FGF17 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIFGF17 [Mapview hg19]  FGF17 [Mapview hg38]
OMIM146110   603725   615270   
Gene and transcription
Genbank (Entrez)AB009249 AK091643 AY358869 BC069475 BC105131
RefSeq transcript (Entrez)NM_001304478 NM_003867
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FGF17
Cluster EST : UnigeneHs.248192 [ NCBI ]
CGAP (NCI)Hs.248192
Alternative Splicing GalleryENSG00000158815
Gene ExpressionFGF17 [ NCBI-GEO ]   FGF17 [ EBI - ARRAY_EXPRESS ]   FGF17 [ SEEK ]   FGF17 [ MEM ]
Gene Expression Viewer (FireBrowse)FGF17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8822
GTEX Portal (Tissue expression)FGF17
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60258   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60258  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60258
Splice isoforms : SwissVarO60258
PhosPhoSitePlusO60258
Domaine pattern : Prosite (Expaxy)HBGF_FGF (PS00247)   
Domains : Interpro (EBI)FGF17    Fibroblast_GF_fam    IL1/FGF   
Domain families : Pfam (Sanger)FGF (PF00167)   
Domain families : Pfam (NCBI)pfam00167   
Domain families : Smart (EMBL)FGF (SM00442)  
Conserved Domain (NCBI)FGF17
DMDM Disease mutations8822
Blocks (Seattle)FGF17
SuperfamilyO60258
Human Protein AtlasENSG00000158815
Peptide AtlasO60258
HPRD04765
IPIIPI00028483   IPI00385645   
Protein Interaction databases
DIP (DOE-UCLA)O60258
IntAct (EBI)O60258
FunCoupENSG00000158815
BioGRIDFGF17
STRING (EMBL)FGF17
ZODIACFGF17
Ontologies - Pathways
QuickGOO60258
Ontology : AmiGOMAPK cascade  protein tyrosine kinase activity  Ras guanyl-nucleotide exchange factor activity  type 1 fibroblast growth factor receptor binding  type 2 fibroblast growth factor receptor binding  extracellular region  extracellular region  extracellular space  intracellular  signal transduction  cell-cell signaling  nervous system development  growth factor activity  positive regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  regulation of phosphatidylinositol 3-kinase signaling  1-phosphatidylinositol-3-kinase activity  peptidyl-tyrosine phosphorylation  phosphatidylinositol-3-phosphate biosynthetic process  positive regulation of GTPase activity  phosphatidylinositol phosphorylation  phosphatidylinositol-4,5-bisphosphate 3-kinase activity  phosphatidylinositol-mediated signaling  
Ontology : EGO-EBIMAPK cascade  protein tyrosine kinase activity  Ras guanyl-nucleotide exchange factor activity  type 1 fibroblast growth factor receptor binding  type 2 fibroblast growth factor receptor binding  extracellular region  extracellular region  extracellular space  intracellular  signal transduction  cell-cell signaling  nervous system development  growth factor activity  positive regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  regulation of phosphatidylinositol 3-kinase signaling  1-phosphatidylinositol-3-kinase activity  peptidyl-tyrosine phosphorylation  phosphatidylinositol-3-phosphate biosynthetic process  positive regulation of GTPase activity  phosphatidylinositol phosphorylation  phosphatidylinositol-4,5-bisphosphate 3-kinase activity  phosphatidylinositol-mediated signaling  
Pathways : KEGGMAPK signaling pathway    Ras signaling pathway    Rap1 signaling pathway    PI3K-Akt signaling pathway    Regulation of actin cytoskeleton    Pathways in cancer    Proteoglycans in cancer    Melanoma   
NDEx NetworkFGF17
Atlas of Cancer Signalling NetworkFGF17
Wikipedia pathwaysFGF17
Orthology - Evolution
OrthoDB8822
GeneTree (enSembl)ENSG00000158815
Phylogenetic Trees/Animal Genes : TreeFamFGF17
HOVERGENO60258
HOGENOMO60258
Homologs : HomoloGeneFGF17
Homology/Alignments : Family Browser (UCSC)FGF17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGF17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGF17
dbVarFGF17
ClinVarFGF17
1000_GenomesFGF17 
Exome Variant ServerFGF17
ExAC (Exome Aggregation Consortium)FGF17 (select the gene name)
Genetic variants : HAPMAP8822
Genomic Variants (DGV)FGF17 [DGVbeta]
DECIPHERFGF17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFGF17 
Mutations
ICGC Data PortalFGF17 
TCGA Data PortalFGF17 
Broad Tumor PortalFGF17
OASIS PortalFGF17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGF17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFGF17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGF17
DgiDB (Drug Gene Interaction Database)FGF17
DoCM (Curated mutations)FGF17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGF17 (select a term)
intoGenFGF17
Cancer3DFGF17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146110    603725    615270   
Orphanet3249    8668   
MedgenFGF17
Genetic Testing Registry FGF17
NextProtO60258 [Medical]
TSGene8822
GENETestsFGF17
Target ValidationFGF17
Huge Navigator FGF17 [HugePedia]
snp3D : Map Gene to Disease8822
BioCentury BCIQFGF17
ClinGenFGF17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8822
Chemical/Pharm GKB GenePA28112
Clinical trialFGF17
Miscellaneous
canSAR (ICR)FGF17 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGF17
EVEXFGF17
GoPubMedFGF17
iHOPFGF17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:33:54 CEST 2017

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