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FGF20 (fibroblast growth factor 20)

Identity

Alias (NCBI)FGF-20
RHDA2
HGNC (Hugo) FGF20
LocusID (NCBI) 26281
Atlas_Id 40559
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 16992181 and ends at 17002345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FGF20   3677
Cards
Entrez_Gene (NCBI)FGF20    fibroblast growth factor 20
AliasesFGF-20; RHDA2
GeneCards (Weizmann)FGF20
Ensembl hg19 (Hinxton)ENSG00000078579 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000078579 [Gene_View]  ENSG00000078579 [Sequence]  chr8:16992181-17002345 [Contig_View]  FGF20 [Vega]
ICGC DataPortalENSG00000078579
TCGA cBioPortalFGF20
AceView (NCBI)FGF20
Genatlas (Paris)FGF20
SOURCE (Princeton)FGF20
Genetics Home Reference (NIH)FGF20
Genomic and cartography
GoldenPath hg38 (UCSC)FGF20  -     chr8:16992181-17002345 -  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FGF20  -     8p22   [Description]    (hg19-Feb_2009)
GoldenPathFGF20 - 8p22 [CytoView hg19]  FGF20 - 8p22 [CytoView hg38]
ImmunoBaseENSG00000078579
Genome Data Viewer NCBIFGF20 [Mapview hg19]  
OMIM605558   615721   
Gene and transcription
Genbank (Entrez)AB030648 AB044277 BC096720 BC098128 BC098153
RefSeq transcript (Entrez)NM_019851
Consensus coding sequences : CCDS (NCBI)FGF20
Gene ExpressionFGF20 [ NCBI-GEO ]   FGF20 [ EBI - ARRAY_EXPRESS ]   FGF20 [ SEEK ]   FGF20 [ MEM ]
Gene Expression Viewer (FireBrowse)FGF20 [ Firebrowse - Broad ]
GenevisibleExpression of FGF20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26281
GTEX Portal (Tissue expression)FGF20
Human Protein AtlasENSG00000078579-FGF20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP95   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP95  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP95
PhosPhoSitePlusQ9NP95
Domaine pattern : Prosite (Expaxy)HBGF_FGF (PS00247)   
Domains : Interpro (EBI)FGF20    Fibroblast_GF_fam    IL1/FGF   
Domain families : Pfam (Sanger)FGF (PF00167)   
Domain families : Pfam (NCBI)pfam00167   
Domain families : Smart (EMBL)FGF (SM00442)  
Conserved Domain (NCBI)FGF20
PDB (RSDB)3F1R   
PDB Europe3F1R   
PDB (PDBSum)3F1R   
PDB (IMB)3F1R   
Structural Biology KnowledgeBase3F1R   
SCOP (Structural Classification of Proteins)3F1R   
CATH (Classification of proteins structures)3F1R   
SuperfamilyQ9NP95
AlphaFold pdb e-kbQ9NP95   
Human Protein Atlas [tissue]ENSG00000078579-FGF20 [tissue]
HPRD05709
Protein Interaction databases
DIP (DOE-UCLA)Q9NP95
IntAct (EBI)Q9NP95
BioGRIDFGF20
STRING (EMBL)FGF20
ZODIACFGF20
Ontologies - Pathways
QuickGOQ9NP95
Ontology : AmiGOMAPK cascade  positive regulation of protein phosphorylation  signaling receptor binding  fibroblast growth factor receptor binding  extracellular region  extracellular space  cytoplasm  signal transduction  cell-cell signaling  growth factor activity  growth factor activity  positive regulation of cell population proliferation  positive regulation of cell population proliferation  fibroblast growth factor receptor signaling pathway  fibroblast growth factor receptor signaling pathway  animal organ morphogenesis  positive regulation of gene expression  regulation of dopamine secretion  cell differentiation  regulation of cell migration  heparan sulfate proteoglycan binding  negative regulation of neuron apoptotic process  positive regulation of protein kinase B signaling  regulation of cardiac muscle cell proliferation  inner ear receptor cell differentiation  positive regulation of ERK1 and ERK2 cascade  receptor-receptor interaction  positive regulation of dopaminergic neuron differentiation  
Ontology : EGO-EBIMAPK cascade  positive regulation of protein phosphorylation  signaling receptor binding  fibroblast growth factor receptor binding  extracellular region  extracellular space  cytoplasm  signal transduction  cell-cell signaling  growth factor activity  growth factor activity  positive regulation of cell population proliferation  positive regulation of cell population proliferation  fibroblast growth factor receptor signaling pathway  fibroblast growth factor receptor signaling pathway  animal organ morphogenesis  positive regulation of gene expression  regulation of dopamine secretion  cell differentiation  regulation of cell migration  heparan sulfate proteoglycan binding  negative regulation of neuron apoptotic process  positive regulation of protein kinase B signaling  regulation of cardiac muscle cell proliferation  inner ear receptor cell differentiation  positive regulation of ERK1 and ERK2 cascade  receptor-receptor interaction  positive regulation of dopaminergic neuron differentiation  
Pathways : KEGGMAPK signaling pathway    Ras signaling pathway    Rap1 signaling pathway    PI3K-Akt signaling pathway    Regulation of actin cytoskeleton    Pathways in cancer    Proteoglycans in cancer    Melanoma   
NDEx NetworkFGF20
Atlas of Cancer Signalling NetworkFGF20
Wikipedia pathwaysFGF20
Orthology - Evolution
OrthoDB26281
GeneTree (enSembl)ENSG00000078579
Phylogenetic Trees/Animal Genes : TreeFamFGF20
Homologs : HomoloGeneFGF20
Homology/Alignments : Family Browser (UCSC)FGF20
Gene fusions - Rearrangements
Fusion : QuiverFGF20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGF20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGF20
dbVarFGF20
ClinVarFGF20
MonarchFGF20
1000_GenomesFGF20 
Exome Variant ServerFGF20
GNOMAD BrowserENSG00000078579
Varsome BrowserFGF20
ACMGFGF20 variants
VarityQ9NP95
Genomic Variants (DGV)FGF20 [DGVbeta]
DECIPHERFGF20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFGF20 
Mutations
ICGC Data PortalFGF20 
TCGA Data PortalFGF20 
Broad Tumor PortalFGF20
OASIS PortalFGF20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGF20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFGF20
Mutations and Diseases : HGMDFGF20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFGF20
DgiDB (Drug Gene Interaction Database)FGF20
DoCM (Curated mutations)FGF20
CIViC (Clinical Interpretations of Variants in Cancer)FGF20
Cancer3DFGF20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605558    615721   
Orphanet2656   
DisGeNETFGF20
MedgenFGF20
Genetic Testing Registry FGF20
NextProtQ9NP95 [Medical]
GENETestsFGF20
Target ValidationFGF20
Huge Navigator FGF20 [HugePedia]
ClinGenFGF20
Clinical trials, drugs, therapy
MyCancerGenomeFGF20
Protein Interactions : CTDFGF20
Pharm GKB GenePA28116
PharosQ9NP95
Clinical trialFGF20
Miscellaneous
canSAR (ICR)FGF20
HarmonizomeFGF20
DataMed IndexFGF20
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFGF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:09:26 CEST 2021

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