Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FGF3 (fibroblast growth factor 3)

Identity

Other namesHBGF-3
INT2
HGNC (Hugo) FGF3
LocusID (NCBI) 2248
Location 11q13.3
Location_base_pair Starts at 69624736 and ends at 69634192 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945 MedulloblastomaID5065 rhab5004 rhabID5004

External links

Nomenclature
HGNC (Hugo)FGF3   3681
Cards
Entrez_Gene (NCBI)FGF3  2248  fibroblast growth factor 3
GeneCards (Weizmann)FGF3
Ensembl (Hinxton) [Gene_View]  chr11:69624736-69634192 [Contig_View]  FGF3 [Vega]
AceView (NCBI)FGF3
Genatlas (Paris)FGF3
WikiGenes2248
SOURCE (Princeton)NM_005247
Genomic and cartography
GoldenPath (UCSC)FGF3  -  11q13.3   chr11:69624736-69634192 -  11q13.3   [Description]    (hg19-Feb_2009)
EnsemblFGF3 - 11q13.3 [CytoView]
Mapping of homologs : NCBIFGF3 [Mapview]
OMIM164950   610706   
Gene and transcription
Genbank (Entrez)BC113739
RefSeq transcript (Entrez)NM_005247
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_009016 NT_167190 NW_001838027 NW_004929380
Consensus coding sequences : CCDS (NCBI)FGF3
Cluster EST : UnigeneHs.37092 [ NCBI ]
CGAP (NCI)Hs.37092
Alternative Splicing : Fast-db (Paris)GSHG0005976
Gene ExpressionFGF3 [ NCBI-GEO ]     FGF3 [ SEEK ]   FGF3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11487 (Uniprot)
NextProtP11487  [Medical]
With graphics : InterProP11487
Splice isoforms : SwissVarP11487 (Swissvar)
Domaine pattern : Prosite (Expaxy)HBGF_FGF (PS00247)   
Domains : Interpro (EBI)Cytokine_IL1-like    FGF3    Fibroblast_GF_fam    IL-1_fam/FGF_fam   
Related proteins : CluSTrP11487
Domain families : Pfam (Sanger)FGF (PF00167)   
Domain families : Pfam (NCBI)pfam00167   
Domain families : Smart (EMBL)FGF (SM00442)  
DMDM Disease mutations2248
Blocks (Seattle)P11487
Peptide AtlasP11487
HPRD01289
IPIIPI00005729   
Protein Interaction databases
DIP (DOE-UCLA)P11487
IntAct (EBI)P11487
BioGRIDFGF3
InParanoidP11487
Interologous Interaction database P11487
IntegromeDBFGF3
STRING (EMBL)FGF3
Ontologies - Pathways
Ontology : AmiGOorgan induction  fibroblast growth factor receptor binding  protein binding  extracellular region  Golgi apparatus  signal transduction  epidermal growth factor receptor signaling pathway  cell-cell signaling  growth factor activity  positive regulation of cell proliferation  insulin receptor signaling pathway  fibroblast growth factor receptor signaling pathway  fibroblast growth factor receptor signaling pathway  anatomical structure morphogenesis  otic vesicle formation  post-anal tail morphogenesis  Fc-epsilon receptor signaling pathway  innate immune response  neurotrophin TRK receptor signaling pathway  phosphatidylinositol-mediated signaling  thymus development  semicircular canal morphogenesis  positive regulation of cell division  negative regulation of cardiac muscle tissue development  
Ontology : EGO-EBIorgan induction  fibroblast growth factor receptor binding  protein binding  extracellular region  Golgi apparatus  signal transduction  epidermal growth factor receptor signaling pathway  cell-cell signaling  growth factor activity  positive regulation of cell proliferation  insulin receptor signaling pathway  fibroblast growth factor receptor signaling pathway  fibroblast growth factor receptor signaling pathway  anatomical structure morphogenesis  otic vesicle formation  post-anal tail morphogenesis  Fc-epsilon receptor signaling pathway  innate immune response  neurotrophin TRK receptor signaling pathway  phosphatidylinositol-mediated signaling  thymus development  semicircular canal morphogenesis  positive regulation of cell division  negative regulation of cardiac muscle tissue development  
Pathways : KEGGMAPK signaling pathway    Ras signaling pathway    Rap1 signaling pathway    PI3K-Akt signaling pathway    Regulation of actin cytoskeleton    Pathways in cancer    Proteoglycans in cancer    Melanoma   
Protein Interaction DatabaseFGF3
Wikipedia pathwaysFGF3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FGF3
SNP (GeneSNP Utah)FGF3
SNP : HGBaseFGF3
Genetic variants : HAPMAPFGF3
1000_GenomesFGF3 
CONAN: Copy Number AnalysisFGF3 
Somatic Mutations in Cancer : COSMICFGF3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDFGF3
OMIM164950    610706   
MedgenFGF3
GENETestsFGF3
Disease Genetic AssociationFGF3
Huge Navigator FGF3 [HugePedia]  FGF3 [HugeCancerGEM]
Genomic VariantsFGF3  FGF3 [DGVbeta]
Exome VariantFGF3
dbVarFGF3
ClinVarFGF3
snp3D : Map Gene to Disease2248
General knowledge
Homologs : HomoloGeneFGF3
Homology/Alignments : Family Browser (UCSC)FGF3
Phylogenetic Trees/Animal Genes : TreeFamFGF3
Chemical/Protein Interactions : CTD2248
Chemical/Pharm GKB GenePA28120
Clinical trialFGF3
Other databases
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
CoreMineFGF3
iHOPFGF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:46:35 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.