Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FGFBP1 (fibroblast growth factor binding protein 1)

Identity

Alias_symbol (synonym)HBP17
FGFBP
Other aliasFGF-BP
FGF-BP1
FGFBP-1
HGNC (Hugo) FGFBP1
LocusID (NCBI) 9982
Atlas_Id 45900
Location 4p15.32  [Link to chromosome band 4p15]
Location_base_pair Starts at 15935570 and ends at 15938740 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FGFBP1   19695
Cards
Entrez_Gene (NCBI)FGFBP1  9982  fibroblast growth factor binding protein 1
AliasesFGF-BP; FGF-BP1; FGFBP; FGFBP-1; 
HBP17
GeneCards (Weizmann)FGFBP1
Ensembl hg19 (Hinxton)ENSG00000137440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137440 [Gene_View]  chr4:15935570-15938740 [Contig_View]  FGFBP1 [Vega]
ICGC DataPortalENSG00000137440
TCGA cBioPortalFGFBP1
AceView (NCBI)FGFBP1
Genatlas (Paris)FGFBP1
WikiGenes9982
SOURCE (Princeton)FGFBP1
Genetics Home Reference (NIH)FGFBP1
Genomic and cartography
GoldenPath hg38 (UCSC)FGFBP1  -     chr4:15935570-15938740 -  4p15.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FGFBP1  -     4p15.32   [Description]    (hg19-Feb_2009)
EnsemblFGFBP1 - 4p15.32 [CytoView hg19]  FGFBP1 - 4p15.32 [CytoView hg38]
Mapping of homologs : NCBIFGFBP1 [Mapview hg19]  FGFBP1 [Mapview hg38]
OMIM607737   
Gene and transcription
Genbank (Entrez)AK291307 AW959908 BC003628 BC008910 BC018852
RefSeq transcript (Entrez)NM_005130
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FGFBP1
Cluster EST : UnigeneHs.1690 [ NCBI ]
CGAP (NCI)Hs.1690
Alternative Splicing GalleryENSG00000137440
Gene ExpressionFGFBP1 [ NCBI-GEO ]   FGFBP1 [ EBI - ARRAY_EXPRESS ]   FGFBP1 [ SEEK ]   FGFBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)FGFBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9982
GTEX Portal (Tissue expression)FGFBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14512   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14512  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14512
Splice isoforms : SwissVarQ14512
PhosPhoSitePlusQ14512
Domains : Interpro (EBI)FGF1-bd   
Domain families : Pfam (Sanger)FGF-BP1 (PF06473)   
Domain families : Pfam (NCBI)pfam06473   
Conserved Domain (NCBI)FGFBP1
DMDM Disease mutations9982
Blocks (Seattle)FGFBP1
SuperfamilyQ14512
Human Protein AtlasENSG00000137440
Peptide AtlasQ14512
HPRD06371
IPIIPI00021399   
Protein Interaction databases
DIP (DOE-UCLA)Q14512
IntAct (EBI)Q14512
FunCoupENSG00000137440
BioGRIDFGFBP1
STRING (EMBL)FGFBP1
ZODIACFGFBP1
Ontologies - Pathways
QuickGOQ14512
Ontology : AmiGOprotein binding  extracellular region  extracellular space  plasma membrane  signal transduction  cell-cell signaling  heparin binding  positive regulation of cell proliferation  negative regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  cell surface  fibroblast growth factor binding  positive regulation of fibroblast growth factor receptor signaling pathway  
Ontology : EGO-EBIprotein binding  extracellular region  extracellular space  plasma membrane  signal transduction  cell-cell signaling  heparin binding  positive regulation of cell proliferation  negative regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  cell surface  fibroblast growth factor binding  positive regulation of fibroblast growth factor receptor signaling pathway  
NDEx NetworkFGFBP1
Atlas of Cancer Signalling NetworkFGFBP1
Wikipedia pathwaysFGFBP1
Orthology - Evolution
OrthoDB9982
GeneTree (enSembl)ENSG00000137440
Phylogenetic Trees/Animal Genes : TreeFamFGFBP1
HOVERGENQ14512
HOGENOMQ14512
Homologs : HomoloGeneFGFBP1
Homology/Alignments : Family Browser (UCSC)FGFBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGFBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGFBP1
dbVarFGFBP1
ClinVarFGFBP1
1000_GenomesFGFBP1 
Exome Variant ServerFGFBP1
ExAC (Exome Aggregation Consortium)FGFBP1 (select the gene name)
Genetic variants : HAPMAP9982
Genomic Variants (DGV)FGFBP1 [DGVbeta]
DECIPHERFGFBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFGFBP1 
Mutations
ICGC Data PortalFGFBP1 
TCGA Data PortalFGFBP1 
Broad Tumor PortalFGFBP1
OASIS PortalFGFBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGFBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFGFBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGFBP1
DgiDB (Drug Gene Interaction Database)FGFBP1
DoCM (Curated mutations)FGFBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGFBP1 (select a term)
intoGenFGFBP1
Cancer3DFGFBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607737   
Orphanet
MedgenFGFBP1
Genetic Testing Registry FGFBP1
NextProtQ14512 [Medical]
TSGene9982
GENETestsFGFBP1
Huge Navigator FGFBP1 [HugePedia]
snp3D : Map Gene to Disease9982
BioCentury BCIQFGFBP1
ClinGenFGFBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9982
Chemical/Pharm GKB GenePA134880558
Clinical trialFGFBP1
Miscellaneous
canSAR (ICR)FGFBP1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGFBP1
EVEXFGFBP1
GoPubMedFGFBP1
iHOPFGFBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:16:00 CEST 2017

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