Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FGFBP3 (fibroblast growth factor binding protein 3)

Identity

Alias (NCBI)C10orf13
FGF-BP3
HGNC (Hugo) FGFBP3
HGNC Alias symbMGC39320
HGNC Previous nameC10orf13
HGNC Previous namechromosome 10 open reading frame 13
LocusID (NCBI) 143282
Atlas_Id 63377
Location 10q23.32  [Link to chromosome band 10q23]
Location_base_pair Starts at 91906588 and ends at 91909501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FGFBP3   23428
Cards
Entrez_Gene (NCBI)FGFBP3    fibroblast growth factor binding protein 3
AliasesC10orf13; FGF-BP3
GeneCards (Weizmann)FGFBP3
Ensembl hg19 (Hinxton)ENSG00000174721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174721 [Gene_View]  ENSG00000174721 [Sequence]  chr10:91906588-91909501 [Contig_View]  FGFBP3 [Vega]
ICGC DataPortalENSG00000174721
TCGA cBioPortalFGFBP3
AceView (NCBI)FGFBP3
Genatlas (Paris)FGFBP3
SOURCE (Princeton)FGFBP3
Genetics Home Reference (NIH)FGFBP3
Genomic and cartography
GoldenPath hg38 (UCSC)FGFBP3  -     chr10:91906588-91909501 -  10q23.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FGFBP3  -     10q23.32   [Description]    (hg19-Feb_2009)
GoldenPathFGFBP3 - 10q23.32 [CytoView hg19]  FGFBP3 - 10q23.32 [CytoView hg38]
ImmunoBaseENSG00000174721
genome Data Viewer NCBIFGFBP3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK075410 AK315427 BC025966 DQ503576 DR759872
RefSeq transcript (Entrez)NM_152429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FGFBP3
Alternative Splicing GalleryENSG00000174721
Gene ExpressionFGFBP3 [ NCBI-GEO ]   FGFBP3 [ EBI - ARRAY_EXPRESS ]   FGFBP3 [ SEEK ]   FGFBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)FGFBP3 [ Firebrowse - Broad ]
GenevisibleExpression of FGFBP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143282
GTEX Portal (Tissue expression)FGFBP3
Human Protein AtlasENSG00000174721-FGFBP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAT2
Splice isoforms : SwissVarQ8TAT2
PhosPhoSitePlusQ8TAT2
Domains : Interpro (EBI)FGF1-bd   
Domain families : Pfam (Sanger)FGF-BP1 (PF06473)   
Domain families : Pfam (NCBI)pfam06473   
Conserved Domain (NCBI)FGFBP3
Blocks (Seattle)FGFBP3
SuperfamilyQ8TAT2
Human Protein Atlas [tissue]ENSG00000174721-FGFBP3 [tissue]
Peptide AtlasQ8TAT2
HPRD08499
IPIIPI00301201   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAT2
IntAct (EBI)Q8TAT2
BioGRIDFGFBP3
STRING (EMBL)FGFBP3
ZODIACFGFBP3
Ontologies - Pathways
QuickGOQ8TAT2
Ontology : AmiGOextracellular region  cell-cell signaling  heparin binding  fibroblast growth factor binding  positive regulation of vascular permeability  positive regulation of fibroblast growth factor receptor signaling pathway  collagen-containing extracellular matrix  
Ontology : EGO-EBIextracellular region  cell-cell signaling  heparin binding  fibroblast growth factor binding  positive regulation of vascular permeability  positive regulation of fibroblast growth factor receptor signaling pathway  collagen-containing extracellular matrix  
NDEx NetworkFGFBP3
Atlas of Cancer Signalling NetworkFGFBP3
Wikipedia pathwaysFGFBP3
Orthology - Evolution
OrthoDB143282
GeneTree (enSembl)ENSG00000174721
Phylogenetic Trees/Animal Genes : TreeFamFGFBP3
HOGENOMQ8TAT2
Homologs : HomoloGeneFGFBP3
Homology/Alignments : Family Browser (UCSC)FGFBP3
Gene fusions - Rearrangements
Fusion : QuiverFGFBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGFBP3 [hg38]
dbVarFGFBP3
ClinVarFGFBP3
MonarchFGFBP3
1000_GenomesFGFBP3 
Exome Variant ServerFGFBP3
GNOMAD BrowserENSG00000174721
Varsome BrowserFGFBP3
Genomic Variants (DGV)FGFBP3 [DGVbeta]
DECIPHERFGFBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFGFBP3 
Mutations
ICGC Data PortalFGFBP3 
TCGA Data PortalFGFBP3 
Broad Tumor PortalFGFBP3
OASIS PortalFGFBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGFBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFGFBP3
Mutations and Diseases : HGMDFGFBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGFBP3
DgiDB (Drug Gene Interaction Database)FGFBP3
DoCM (Curated mutations)FGFBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGFBP3 (select a term)
intoGenFGFBP3
Cancer3DFGFBP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFGFBP3
MedgenFGFBP3
Genetic Testing Registry FGFBP3
NextProtQ8TAT2 [Medical]
GENETestsFGFBP3
Target ValidationFGFBP3
Huge Navigator FGFBP3 [HugePedia]
ClinGenFGFBP3
Clinical trials, drugs, therapy
MyCancerGenomeFGFBP3
Protein Interactions : CTD
Pharm GKB GenePA162388444
Clinical trialFGFBP3
Miscellaneous
canSAR (ICR)FGFBP3 (select the gene name)
HarmonizomeFGFBP3
DataMed IndexFGFBP3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGFBP3
EVEXFGFBP3
GoPubMedFGFBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:54:37 CET 2020
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