Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FGFBP3 (fibroblast growth factor binding protein 3)

Identity

Alias_namesC10orf13
chromosome 10 open reading frame 13
Alias_symbol (synonym)MGC39320
Other aliasFGF-BP3
HGNC (Hugo) FGFBP3
LocusID (NCBI) 143282
Atlas_Id 63377
Location 10q23.32  [Link to chromosome band 10q23]
Location_base_pair Starts at 91906588 and ends at 91909501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FGFBP3   23428
Cards
Entrez_Gene (NCBI)FGFBP3  143282  fibroblast growth factor binding protein 3
AliasesC10orf13; FGF-BP3
GeneCards (Weizmann)FGFBP3
Ensembl hg19 (Hinxton)ENSG00000174721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174721 [Gene_View]  ENSG00000174721 [Sequence]  chr10:91906588-91909501 [Contig_View]  FGFBP3 [Vega]
ICGC DataPortalENSG00000174721
TCGA cBioPortalFGFBP3
AceView (NCBI)FGFBP3
Genatlas (Paris)FGFBP3
WikiGenes143282
SOURCE (Princeton)FGFBP3
Genetics Home Reference (NIH)FGFBP3
Genomic and cartography
GoldenPath hg38 (UCSC)FGFBP3  -     chr10:91906588-91909501 -  10q23.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FGFBP3  -     10q23.32   [Description]    (hg19-Feb_2009)
EnsemblFGFBP3 - 10q23.32 [CytoView hg19]  FGFBP3 - 10q23.32 [CytoView hg38]
Mapping of homologs : NCBIFGFBP3 [Mapview hg19]  FGFBP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075410 AK315427 BC025966 DQ503576 DR759872
RefSeq transcript (Entrez)NM_152429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FGFBP3
Cluster EST : UnigeneHs.466120 [ NCBI ]
CGAP (NCI)Hs.466120
Alternative Splicing GalleryENSG00000174721
Gene ExpressionFGFBP3 [ NCBI-GEO ]   FGFBP3 [ EBI - ARRAY_EXPRESS ]   FGFBP3 [ SEEK ]   FGFBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)FGFBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143282
GTEX Portal (Tissue expression)FGFBP3
Human Protein AtlasENSG00000174721-FGFBP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAT2
Splice isoforms : SwissVarQ8TAT2
PhosPhoSitePlusQ8TAT2
Domains : Interpro (EBI)FGF1-bd   
Domain families : Pfam (Sanger)FGF-BP1 (PF06473)   
Domain families : Pfam (NCBI)pfam06473   
Conserved Domain (NCBI)FGFBP3
DMDM Disease mutations143282
Blocks (Seattle)FGFBP3
SuperfamilyQ8TAT2
Human Protein Atlas [tissue]ENSG00000174721-FGFBP3 [tissue]
Peptide AtlasQ8TAT2
HPRD08499
IPIIPI00301201   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAT2
IntAct (EBI)Q8TAT2
FunCoupENSG00000174721
BioGRIDFGFBP3
STRING (EMBL)FGFBP3
ZODIACFGFBP3
Ontologies - Pathways
QuickGOQ8TAT2
Ontology : AmiGOextracellular region  heparin binding  fibroblast growth factor binding  extracellular matrix  positive regulation of vascular permeability  positive regulation of fibroblast growth factor receptor signaling pathway  
Ontology : EGO-EBIextracellular region  heparin binding  fibroblast growth factor binding  extracellular matrix  positive regulation of vascular permeability  positive regulation of fibroblast growth factor receptor signaling pathway  
NDEx NetworkFGFBP3
Atlas of Cancer Signalling NetworkFGFBP3
Wikipedia pathwaysFGFBP3
Orthology - Evolution
OrthoDB143282
GeneTree (enSembl)ENSG00000174721
Phylogenetic Trees/Animal Genes : TreeFamFGFBP3
HOVERGENQ8TAT2
HOGENOMQ8TAT2
Homologs : HomoloGeneFGFBP3
Homology/Alignments : Family Browser (UCSC)FGFBP3
Gene fusions - Rearrangements
Fusion : QuiverFGFBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGFBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGFBP3
dbVarFGFBP3
ClinVarFGFBP3
1000_GenomesFGFBP3 
Exome Variant ServerFGFBP3
ExAC (Exome Aggregation Consortium)ENSG00000174721
GNOMAD BrowserENSG00000174721
Varsome BrowserFGFBP3
Genetic variants : HAPMAP143282
Genomic Variants (DGV)FGFBP3 [DGVbeta]
DECIPHERFGFBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFGFBP3 
Mutations
ICGC Data PortalFGFBP3 
TCGA Data PortalFGFBP3 
Broad Tumor PortalFGFBP3
OASIS PortalFGFBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGFBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFGFBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGFBP3
DgiDB (Drug Gene Interaction Database)FGFBP3
DoCM (Curated mutations)FGFBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGFBP3 (select a term)
intoGenFGFBP3
Cancer3DFGFBP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFGFBP3
MedgenFGFBP3
Genetic Testing Registry FGFBP3
NextProtQ8TAT2 [Medical]
TSGene143282
GENETestsFGFBP3
Target ValidationFGFBP3
Huge Navigator FGFBP3 [HugePedia]
snp3D : Map Gene to Disease143282
BioCentury BCIQFGFBP3
ClinGenFGFBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143282
Chemical/Pharm GKB GenePA162388444
Clinical trialFGFBP3
Miscellaneous
canSAR (ICR)FGFBP3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGFBP3
EVEXFGFBP3
GoPubMedFGFBP3
iHOPFGFBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:45:58 CEST 2018
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