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FGFRL1 (fibroblast growth factor receptor-like 1)

Identity

Other namesFGFR5
FHFR
HGNC (Hugo) FGFRL1
LocusID (NCBI) 53834
Location 4p16.3
Location_base_pair Starts at 1005610 and ends at 1020686 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FGFRL1   3693
Cards
Entrez_Gene (NCBI)FGFRL1  53834  fibroblast growth factor receptor-like 1
GeneCards (Weizmann)FGFRL1
Ensembl hg19 (Hinxton)ENSG00000127418 [Gene_View]  chr4:1005610-1020686 [Contig_View]  FGFRL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000127418 [Gene_View]  chr4:1005610-1020686 [Contig_View]  FGFRL1 [Vega]
ICGC DataPortalENSG00000127418
cBioPortalFGFRL1
AceView (NCBI)FGFRL1
Genatlas (Paris)FGFRL1
WikiGenes53834
SOURCE (Princeton)FGFRL1
Genomic and cartography
GoldenPath hg19 (UCSC)FGFRL1  -     chr4:1005610-1020686 +  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FGFRL1  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblFGFRL1 - 4p16.3 [CytoView hg19]  FGFRL1 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIFGFRL1 [Mapview hg19]  FGFRL1 [Mapview hg38]
OMIM605830   
Gene and transcription
Genbank (Entrez)AF279689 AF312678 AJ277437 AK000530 AK022597
RefSeq transcript (Entrez)NM_001004356 NM_001004358 NM_021923
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_006051 NW_001838895 NW_004929313
Consensus coding sequences : CCDS (NCBI)FGFRL1
Cluster EST : UnigeneHs.193326 [ NCBI ]
CGAP (NCI)Hs.193326
Alternative Splicing : Fast-db (Paris)GSHG0022396
Alternative Splicing GalleryENSG00000127418
Gene ExpressionFGFRL1 [ NCBI-GEO ]     FGFRL1 [ SEEK ]   FGFRL1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N441 (Uniprot)
NextProtQ8N441  [Medical]
With graphics : InterProQ8N441
Splice isoforms : SwissVarQ8N441 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Related proteins : CluSTrQ8N441
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
DMDM Disease mutations53834
Blocks (Seattle)Q8N441
Human Protein AtlasENSG00000127418
Peptide AtlasQ8N441
HPRD16163
IPIIPI00296561   IPI01013179   IPI00386054   IPI00976978   IPI00967295   IPI00967886   
Protein Interaction databases
DIP (DOE-UCLA)Q8N441
IntAct (EBI)Q8N441
FunCoupENSG00000127418
BioGRIDFGFRL1
IntegromeDBFGFRL1
STRING (EMBL)FGFRL1
Ontologies - Pathways
QuickGOQ8N441
Ontology : AmiGOskeletal system development  heart valve morphogenesis  fibroblast growth factor-activated receptor activity  plasma membrane  heparin binding  negative regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  fibroblast growth factor receptor signaling pathway  integral component of membrane  fibroblast growth factor binding  ventricular septum morphogenesis  diaphragm development  
Ontology : EGO-EBIskeletal system development  heart valve morphogenesis  fibroblast growth factor-activated receptor activity  plasma membrane  heparin binding  negative regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  fibroblast growth factor receptor signaling pathway  integral component of membrane  fibroblast growth factor binding  ventricular septum morphogenesis  diaphragm development  
Protein Interaction DatabaseFGFRL1
DoCM (Curated mutations)FGFRL1
Wikipedia pathwaysFGFRL1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFGFRL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGFRL1
dbVarFGFRL1
ClinVarFGFRL1
1000_GenomesFGFRL1 
Exome Variant ServerFGFRL1
SNP (GeneSNP Utah)FGFRL1
SNP : HGBaseFGFRL1
Genetic variants : HAPMAPFGFRL1
Genomic VariantsFGFRL1  FGFRL1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000127418 
Somatic Mutations in Cancer : COSMICFGFRL1 
CONAN: Copy Number AnalysisFGFRL1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:1005610-1020686
Mutations and Diseases : HGMDFGFRL1
OMIM605830   
MedgenFGFRL1
NextProtQ8N441 [Medical]
GENETestsFGFRL1
Disease Genetic AssociationFGFRL1
Huge Navigator FGFRL1 [HugePedia]  FGFRL1 [HugeCancerGEM]
snp3D : Map Gene to Disease53834
DGIdb (Drug Gene Interaction db)FGFRL1
General knowledge
Homologs : HomoloGeneFGFRL1
Homology/Alignments : Family Browser (UCSC)FGFRL1
Phylogenetic Trees/Animal Genes : TreeFamFGFRL1
Chemical/Protein Interactions : CTD53834
Chemical/Pharm GKB GenePA28132
Clinical trialFGFRL1
Cancer Resource (Charite)ENSG00000127418
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineFGFRL1
GoPubMedFGFRL1
iHOPFGFRL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:35:06 CET 2014

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