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FGFRL1 (fibroblast growth factor receptor-like 1)

Identity

Other namesFGFR5
FHFR
HGNC (Hugo) FGFRL1
LocusID (NCBI) 53834
Atlas_Id 43781
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 1005610 and ends at 1020686 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FGFRL1   3693
Cards
Entrez_Gene (NCBI)FGFRL1  53834  fibroblast growth factor receptor-like 1
AliasesFGFR5; FHFR
GeneCards (Weizmann)FGFRL1
Ensembl hg19 (Hinxton)ENSG00000127418 [Gene_View]  chr4:1005610-1020686 [Contig_View]  FGFRL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000127418 [Gene_View]  chr4:1005610-1020686 [Contig_View]  FGFRL1 [Vega]
ICGC DataPortalENSG00000127418
TCGA cBioPortalFGFRL1
AceView (NCBI)FGFRL1
Genatlas (Paris)FGFRL1
WikiGenes53834
SOURCE (Princeton)FGFRL1
Genomic and cartography
GoldenPath hg19 (UCSC)FGFRL1  -     chr4:1005610-1020686 +  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FGFRL1  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblFGFRL1 - 4p16.3 [CytoView hg19]  FGFRL1 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIFGFRL1 [Mapview hg19]  FGFRL1 [Mapview hg38]
OMIM194190   605830   
Gene and transcription
Genbank (Entrez)AF279689 AF312678 AJ277437 AK000530 AK022597
RefSeq transcript (Entrez)NM_001004356 NM_001004358 NM_021923
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929313
Consensus coding sequences : CCDS (NCBI)FGFRL1
Cluster EST : UnigeneHs.193326 [ NCBI ]
CGAP (NCI)Hs.193326
Alternative Splicing GalleryENSG00000127418
Gene ExpressionFGFRL1 [ NCBI-GEO ]   FGFRL1 [ EBI - ARRAY_EXPRESS ]   FGFRL1 [ SEEK ]   FGFRL1 [ MEM ]
Gene Expression Viewer (FireBrowse)FGFRL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53834
GTEX Portal (Tissue expression)FGFRL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N441 (Uniprot)
NextProtQ8N441  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N441
Splice isoforms : SwissVarQ8N441 (Swissvar)
PhosPhoSitePlusQ8N441
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
DMDM Disease mutations53834
Blocks (Seattle)FGFRL1
SuperfamilyQ8N441
Human Protein AtlasENSG00000127418
Peptide AtlasQ8N441
HPRD16163
IPIIPI00296561   IPI01013179   IPI00386054   IPI00976978   IPI00967295   IPI00967886   
Protein Interaction databases
DIP (DOE-UCLA)Q8N441
IntAct (EBI)Q8N441
FunCoupENSG00000127418
BioGRIDFGFRL1
STRING (EMBL)FGFRL1
ZODIACFGFRL1
Ontologies - Pathways
QuickGOQ8N441
Ontology : AmiGOskeletal system development  heart valve morphogenesis  fibroblast growth factor-activated receptor activity  Golgi apparatus  plasma membrane  plasma membrane  heparin binding  heparin binding  negative regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  integral component of membrane  fibroblast growth factor binding  transport vesicle  substrate adhesion-dependent cell spreading  cell-cell contact zone  protein homooligomerization  protein heterooligomerization  ventricular septum morphogenesis  diaphragm development  cell-cell adhesion via plasma-membrane adhesion molecules  
Ontology : EGO-EBIskeletal system development  heart valve morphogenesis  fibroblast growth factor-activated receptor activity  Golgi apparatus  plasma membrane  plasma membrane  heparin binding  heparin binding  negative regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  integral component of membrane  fibroblast growth factor binding  transport vesicle  substrate adhesion-dependent cell spreading  cell-cell contact zone  protein homooligomerization  protein heterooligomerization  ventricular septum morphogenesis  diaphragm development  cell-cell adhesion via plasma-membrane adhesion molecules  
NDEx Network
Atlas of Cancer Signalling NetworkFGFRL1
Wikipedia pathwaysFGFRL1
Orthology - Evolution
OrthoDB53834
GeneTree (enSembl)ENSG00000127418
Phylogenetic Trees/Animal Genes : TreeFamFGFRL1
Homologs : HomoloGeneFGFRL1
Homology/Alignments : Family Browser (UCSC)FGFRL1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFGFRL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGFRL1
dbVarFGFRL1
ClinVarFGFRL1
1000_GenomesFGFRL1 
Exome Variant ServerFGFRL1
ExAC (Exome Aggregation Consortium)FGFRL1 (select the gene name)
Genetic variants : HAPMAP53834
Genomic Variants (DGV)FGFRL1 [DGVbeta]
Mutations
ICGC Data PortalFGFRL1 
TCGA Data PortalFGFRL1 
Broad Tumor PortalFGFRL1
OASIS PortalFGFRL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGFRL1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGFRL1
DgiDB (Drug Gene Interaction Database)FGFRL1
DoCM (Curated mutations)FGFRL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGFRL1 (select a term)
intoGenFGFRL1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:1005610-1020686  ENSG00000127418
CONAN: Copy Number AnalysisFGFRL1 
Mutations and Diseases : HGMDFGFRL1
OMIM194190    605830   
MedgenFGFRL1
Genetic Testing Registry FGFRL1
NextProtQ8N441 [Medical]
TSGene53834
GENETestsFGFRL1
Huge Navigator FGFRL1 [HugePedia]
snp3D : Map Gene to Disease53834
BioCentury BCIQFGFRL1
ClinGenFGFRL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53834
Chemical/Pharm GKB GenePA28132
Clinical trialFGFRL1
Miscellaneous
canSAR (ICR)FGFRL1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGFRL1
EVEXFGFRL1
GoPubMedFGFRL1
iHOPFGFRL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:22:41 CEST 2016

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