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FGGY (FGGY carbohydrate kinase domain containing)

Identity

Other alias-
HGNC (Hugo) FGGY
LocusID (NCBI) 55277
Atlas_Id 56980
Location 1p32.1  [Link to chromosome band 1p32]
Location_base_pair Starts at 59296953 and ends at 59762731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FGGY (1p32.1) / CDH17 (8q22.1)FGGY (1p32.1) / RPS6KA1 (1p36.11)FGGY (1p32.1) / SLC1A7 (1p32.3)
LDLRAD1 (1p32.3) / FGGY (1p32.1)NFIA (1p31.3) / FGGY (1p32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FGGY   25610
Cards
Entrez_Gene (NCBI)FGGY  55277  FGGY carbohydrate kinase domain containing
Aliases
GeneCards (Weizmann)FGGY
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:59296953-59762731 [Contig_View]  FGGY [Vega]
TCGA cBioPortalFGGY
AceView (NCBI)FGGY
Genatlas (Paris)FGGY
WikiGenes55277
SOURCE (Princeton)FGGY
Genetics Home Reference (NIH)FGGY
Genomic and cartography
GoldenPath hg38 (UCSC)FGGY  -     chr1:59296953-59762731 +  1p32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FGGY  -     1p32.1   [Description]    (hg19-Feb_2009)
EnsemblFGGY - 1p32.1 [CytoView hg19]  FGGY - 1p32.1 [CytoView hg38]
Mapping of homologs : NCBIFGGY [Mapview hg19]  FGGY [Mapview hg38]
OMIM611370   
Gene and transcription
Genbank (Entrez)AA830864 AK001848 AK022237 AK054842 AK090568
RefSeq transcript (Entrez)NM_001113411 NM_001244714 NM_001278224 NM_001350790 NM_001350791 NM_001350792 NM_001350793 NM_001350794 NM_001350795 NM_001350796 NM_001350797 NM_001350798 NM_001350799 NM_018291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FGGY
Cluster EST : UnigeneHs.444301 [ NCBI ]
CGAP (NCI)Hs.444301
Gene ExpressionFGGY [ NCBI-GEO ]   FGGY [ EBI - ARRAY_EXPRESS ]   FGGY [ SEEK ]   FGGY [ MEM ]
Gene Expression Viewer (FireBrowse)FGGY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55277
GTEX Portal (Tissue expression)FGGY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C11
Splice isoforms : SwissVarQ96C11
PhosPhoSitePlusQ96C11
Domains : Interpro (EBI)Carb_kinase_FGGY    Carb_kinase_FGGY_C    Carb_kinase_FGGY_N    FGGY_RbtK-like   
Domain families : Pfam (Sanger)FGGY_C (PF02782)    FGGY_N (PF00370)   
Domain families : Pfam (NCBI)pfam02782    pfam00370   
Conserved Domain (NCBI)FGGY
DMDM Disease mutations55277
Blocks (Seattle)FGGY
SuperfamilyQ96C11
Peptide AtlasQ96C11
IPIIPI00478961   IPI00479683   IPI00892757   IPI01010827   IPI00550498   IPI00827964   IPI00641302   
Protein Interaction databases
DIP (DOE-UCLA)Q96C11
IntAct (EBI)Q96C11
BioGRIDFGGY
STRING (EMBL)FGGY
ZODIACFGGY
Ontologies - Pathways
QuickGOQ96C11
Ontology : AmiGOmolecular_function  cellular_component  cell  D-ribulokinase activity  pentose metabolic process  pentose metabolic process  carbohydrate phosphorylation  neuron cellular homeostasis  
Ontology : EGO-EBImolecular_function  cellular_component  cell  D-ribulokinase activity  pentose metabolic process  pentose metabolic process  carbohydrate phosphorylation  neuron cellular homeostasis  
NDEx NetworkFGGY
Atlas of Cancer Signalling NetworkFGGY
Wikipedia pathwaysFGGY
Orthology - Evolution
OrthoDB55277
Phylogenetic Trees/Animal Genes : TreeFamFGGY
HOVERGENQ96C11
HOGENOMQ96C11
Homologs : HomoloGeneFGGY
Homology/Alignments : Family Browser (UCSC)FGGY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGGY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGGY
dbVarFGGY
ClinVarFGGY
1000_GenomesFGGY 
Exome Variant ServerFGGY
ExAC (Exome Aggregation Consortium)FGGY (select the gene name)
Genetic variants : HAPMAP55277
Genomic Variants (DGV)FGGY [DGVbeta]
DECIPHERFGGY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFGGY 
Mutations
ICGC Data PortalFGGY 
TCGA Data PortalFGGY 
Broad Tumor PortalFGGY
OASIS PortalFGGY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGGY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFGGY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGGY
DgiDB (Drug Gene Interaction Database)FGGY
DoCM (Curated mutations)FGGY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGGY (select a term)
intoGenFGGY
Cancer3DFGGY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611370   
Orphanet
MedgenFGGY
Genetic Testing Registry FGGY
NextProtQ96C11 [Medical]
TSGene55277
GENETestsFGGY
Target ValidationFGGY
Huge Navigator FGGY [HugePedia]
snp3D : Map Gene to Disease55277
BioCentury BCIQFGGY
ClinGenFGGY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55277
Chemical/Pharm GKB GenePA162388453
Clinical trialFGGY
Miscellaneous
canSAR (ICR)FGGY (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGGY
EVEXFGGY
GoPubMedFGGY
iHOPFGGY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:53:29 CEST 2017

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