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FGL1 (fibrinogen like 1)

Identity

Alias_symbol (synonym)HFREP-1
Other aliasHFREP1
HP-041
LFIRE-1
LFIRE1
HGNC (Hugo) FGL1
LocusID (NCBI) 2267
Atlas_Id 40571
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 17721900 and ends at 17753047 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MTUS1 (8p22) / FGL1 (8p22)PCM1 (8p22) / FGL1 (8p22)MTUS1 8p22 / FGL1 8p22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FGL1   3695
Cards
Entrez_Gene (NCBI)FGL1  2267  fibrinogen like 1
AliasesHFREP1; HP-041; LFIRE-1; LFIRE1
GeneCards (Weizmann)FGL1
Ensembl hg19 (Hinxton)ENSG00000104760 [Gene_View]  chr8:17721900-17753047 [Contig_View]  FGL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104760 [Gene_View]  chr8:17721900-17753047 [Contig_View]  FGL1 [Vega]
ICGC DataPortalENSG00000104760
TCGA cBioPortalFGL1
AceView (NCBI)FGL1
Genatlas (Paris)FGL1
WikiGenes2267
SOURCE (Princeton)FGL1
Genetics Home Reference (NIH)FGL1
Genomic and cartography
GoldenPath hg19 (UCSC)FGL1  -     chr8:17721900-17753047 -  8p22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FGL1  -     8p22   [Description]    (hg38-Dec_2013)
EnsemblFGL1 - 8p22 [CytoView hg19]  FGL1 - 8p22 [CytoView hg38]
Mapping of homologs : NCBIFGL1 [Mapview hg19]  FGL1 [Mapview hg38]
OMIM605776   
Gene and transcription
Genbank (Entrez)AF042354 AF168954 AK225616 AK225619 AK289448
RefSeq transcript (Entrez)NM_004467 NM_147203 NM_201552 NM_201553
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)FGL1
Cluster EST : UnigeneHs.491143 [ NCBI ]
CGAP (NCI)Hs.491143
Alternative Splicing GalleryENSG00000104760
Gene ExpressionFGL1 [ NCBI-GEO ]   FGL1 [ EBI - ARRAY_EXPRESS ]   FGL1 [ SEEK ]   FGL1 [ MEM ]
Gene Expression Viewer (FireBrowse)FGL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2267
GTEX Portal (Tissue expression)FGL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08830   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08830  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08830
Splice isoforms : SwissVarQ08830
PhosPhoSitePlusQ08830
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_2    Fibrinogen_a/b/g_C_dom    Fibrinogen_CS   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)FGL1
DMDM Disease mutations2267
Blocks (Seattle)FGL1
SuperfamilyQ08830
Human Protein AtlasENSG00000104760
Peptide AtlasQ08830
HPRD09312
IPIIPI00955773   IPI00303482   IPI00984671   
Protein Interaction databases
DIP (DOE-UCLA)Q08830
IntAct (EBI)Q08830
FunCoupENSG00000104760
BioGRIDFGL1
STRING (EMBL)FGL1
ZODIACFGL1
Ontologies - Pathways
QuickGOQ08830
Ontology : AmiGOfibrinogen complex  extracellular exosome  
Ontology : EGO-EBIfibrinogen complex  extracellular exosome  
NDEx NetworkFGL1
Atlas of Cancer Signalling NetworkFGL1
Wikipedia pathwaysFGL1
Orthology - Evolution
OrthoDB2267
GeneTree (enSembl)ENSG00000104760
Phylogenetic Trees/Animal Genes : TreeFamFGL1
HOVERGENQ08830
HOGENOMQ08830
Homologs : HomoloGeneFGL1
Homology/Alignments : Family Browser (UCSC)FGL1
Gene fusions - Rearrangements
Fusion: TCGAMTUS1 8p22 FGL1 8p22 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFGL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FGL1
dbVarFGL1
ClinVarFGL1
1000_GenomesFGL1 
Exome Variant ServerFGL1
ExAC (Exome Aggregation Consortium)FGL1 (select the gene name)
Genetic variants : HAPMAP2267
Genomic Variants (DGV)FGL1 [DGVbeta]
DECIPHER (Syndromes)8:17721900-17753047  ENSG00000104760
CONAN: Copy Number AnalysisFGL1 
Mutations
ICGC Data PortalFGL1 
TCGA Data PortalFGL1 
Broad Tumor PortalFGL1
OASIS PortalFGL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFGL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFGL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FGL1
DgiDB (Drug Gene Interaction Database)FGL1
DoCM (Curated mutations)FGL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FGL1 (select a term)
intoGenFGL1
Cancer3DFGL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605776   
Orphanet
MedgenFGL1
Genetic Testing Registry FGL1
NextProtQ08830 [Medical]
TSGene2267
GENETestsFGL1
Huge Navigator FGL1 [HugePedia]
snp3D : Map Gene to Disease2267
BioCentury BCIQFGL1
ClinGenFGL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2267
Chemical/Pharm GKB GenePA28133
Clinical trialFGL1
Miscellaneous
canSAR (ICR)FGL1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFGL1
EVEXFGL1
GoPubMedFGL1
iHOPFGL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:01:17 CEST 2017

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