Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FHAD1 (forkhead associated phosphopeptide binding domain 1)

Identity

Alias_namesforkhead-associated (FHA) phosphopeptide binding domain 1
Alias_symbol (synonym)KIAA1937
Other alias-
HGNC (Hugo) FHAD1
LocusID (NCBI) 114827
Atlas_Id 63379
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 15247272 and ends at 15398126 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL8A2 (1p34.3) / FHAD1 (1p36.21)FHAD1 (1p36.21) / COL8A2 (1p34.3)KIDINS220 (2p25.1) / FHAD1 (1p36.21)
ZNF148 (3q21.2) / FHAD1 (1p36.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FHAD1   29408
Cards
Entrez_Gene (NCBI)FHAD1  114827  forkhead associated phosphopeptide binding domain 1
Aliases
GeneCards (Weizmann)FHAD1
Ensembl hg19 (Hinxton)ENSG00000142621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142621 [Gene_View]  chr1:15247272-15398126 [Contig_View]  FHAD1 [Vega]
ICGC DataPortalENSG00000142621
TCGA cBioPortalFHAD1
AceView (NCBI)FHAD1
Genatlas (Paris)FHAD1
WikiGenes114827
SOURCE (Princeton)FHAD1
Genetics Home Reference (NIH)FHAD1
Genomic and cartography
GoldenPath hg38 (UCSC)FHAD1  -     chr1:15247272-15398126 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FHAD1  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblFHAD1 - 1p36.21 [CytoView hg19]  FHAD1 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIFHAD1 [Mapview hg19]  FHAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067524 AK057963 AK093300 AK093883 AK096961
RefSeq transcript (Entrez)NM_052929
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FHAD1
Cluster EST : UnigeneHs.659997 [ NCBI ]
CGAP (NCI)Hs.659997
Alternative Splicing GalleryENSG00000142621
Gene ExpressionFHAD1 [ NCBI-GEO ]   FHAD1 [ EBI - ARRAY_EXPRESS ]   FHAD1 [ SEEK ]   FHAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FHAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114827
GTEX Portal (Tissue expression)FHAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtB1AJZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB1AJZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB1AJZ9
Splice isoforms : SwissVarB1AJZ9
PhosPhoSitePlusB1AJZ9
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)   
Domains : Interpro (EBI)FHA_dom    SMAD_FHA_domain   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Domain families : Smart (EMBL)FHA (SM00240)  
Conserved Domain (NCBI)FHAD1
DMDM Disease mutations114827
Blocks (Seattle)FHAD1
SuperfamilyB1AJZ9
Human Protein AtlasENSG00000142621
Peptide AtlasB1AJZ9
IPIIPI00888920   IPI00167447   IPI00903343   IPI00903011   IPI00640782   IPI00552817   IPI00173653   IPI00985091   IPI01014378   IPI00973897   IPI00640077   IPI00974568   IPI00977112   
Protein Interaction databases
DIP (DOE-UCLA)B1AJZ9
IntAct (EBI)B1AJZ9
FunCoupENSG00000142621
BioGRIDFHAD1
STRING (EMBL)FHAD1
ZODIACFHAD1
Ontologies - Pathways
QuickGOB1AJZ9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFHAD1
Atlas of Cancer Signalling NetworkFHAD1
Wikipedia pathwaysFHAD1
Orthology - Evolution
OrthoDB114827
GeneTree (enSembl)ENSG00000142621
Phylogenetic Trees/Animal Genes : TreeFamFHAD1
HOVERGENB1AJZ9
HOGENOMB1AJZ9
Homologs : HomoloGeneFHAD1
Homology/Alignments : Family Browser (UCSC)FHAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFHAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FHAD1
dbVarFHAD1
ClinVarFHAD1
1000_GenomesFHAD1 
Exome Variant ServerFHAD1
ExAC (Exome Aggregation Consortium)FHAD1 (select the gene name)
Genetic variants : HAPMAP114827
Genomic Variants (DGV)FHAD1 [DGVbeta]
DECIPHERFHAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFHAD1 
Mutations
ICGC Data PortalFHAD1 
TCGA Data PortalFHAD1 
Broad Tumor PortalFHAD1
OASIS PortalFHAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFHAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFHAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FHAD1
DgiDB (Drug Gene Interaction Database)FHAD1
DoCM (Curated mutations)FHAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FHAD1 (select a term)
intoGenFHAD1
Cancer3DFHAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFHAD1
Genetic Testing Registry FHAD1
NextProtB1AJZ9 [Medical]
TSGene114827
GENETestsFHAD1
Target ValidationFHAD1
Huge Navigator FHAD1 [HugePedia]
snp3D : Map Gene to Disease114827
BioCentury BCIQFHAD1
ClinGenFHAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114827
Chemical/Pharm GKB GenePA142671762
Clinical trialFHAD1
Miscellaneous
canSAR (ICR)FHAD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFHAD1
EVEXFHAD1
GoPubMedFHAD1
iHOPFHAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:08:29 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.