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FHDC1 (FH2 domain containing 1)

Identity

Alias_symbol (synonym)KIAA1727
Other alias-
HGNC (Hugo) FHDC1
LocusID (NCBI) 85462
Atlas_Id 53001
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 152942983 and ends at 152979696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARFIP1 (4q31.3) / FHDC1 (4q31.3)FHDC1 (4q31.3) / ARFIP1 (4q31.3)FHDC1 (4q31.3) / NUDT7 (16q23.1)
ARFIP1 4q31.3 / FHDC1 4q31.3FHDC1 4q31.3 / ARFIP1 4q31.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FHDC1   29363
Cards
Entrez_Gene (NCBI)FHDC1  85462  FH2 domain containing 1
Aliases
GeneCards (Weizmann)FHDC1
Ensembl hg19 (Hinxton)ENSG00000137460 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137460 [Gene_View]  chr4:152942983-152979696 [Contig_View]  FHDC1 [Vega]
ICGC DataPortalENSG00000137460
TCGA cBioPortalFHDC1
AceView (NCBI)FHDC1
Genatlas (Paris)FHDC1
WikiGenes85462
SOURCE (Princeton)FHDC1
Genetics Home Reference (NIH)FHDC1
Genomic and cartography
GoldenPath hg38 (UCSC)FHDC1  -     chr4:152942983-152979696 +  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FHDC1  -     4q31.3   [Description]    (hg19-Feb_2009)
EnsemblFHDC1 - 4q31.3 [CytoView hg19]  FHDC1 - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBIFHDC1 [Mapview hg19]  FHDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051514 AK172734 BI766662 BQ082418 DQ591010
RefSeq transcript (Entrez)NM_033393
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FHDC1
Cluster EST : UnigeneHs.132629 [ NCBI ]
CGAP (NCI)Hs.132629
Alternative Splicing GalleryENSG00000137460
Gene ExpressionFHDC1 [ NCBI-GEO ]   FHDC1 [ EBI - ARRAY_EXPRESS ]   FHDC1 [ SEEK ]   FHDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)FHDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85462
GTEX Portal (Tissue expression)FHDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0D6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0D6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0D6
Splice isoforms : SwissVarQ9C0D6
PhosPhoSitePlusQ9C0D6
Domaine pattern : Prosite (Expaxy)FH2 (PS51444)   
Domains : Interpro (EBI)FH2_Formin   
Domain families : Pfam (Sanger)FH2 (PF02181)   
Domain families : Pfam (NCBI)pfam02181   
Domain families : Smart (EMBL)FH2 (SM00498)  
Conserved Domain (NCBI)FHDC1
DMDM Disease mutations85462
Blocks (Seattle)FHDC1
SuperfamilyQ9C0D6
Human Protein AtlasENSG00000137460
Peptide AtlasQ9C0D6
HPRD13888
IPIIPI00434629   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0D6
IntAct (EBI)Q9C0D6
FunCoupENSG00000137460
BioGRIDFHDC1
STRING (EMBL)FHDC1
ZODIACFHDC1
Ontologies - Pathways
QuickGOQ9C0D6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFHDC1
Atlas of Cancer Signalling NetworkFHDC1
Wikipedia pathwaysFHDC1
Orthology - Evolution
OrthoDB85462
GeneTree (enSembl)ENSG00000137460
Phylogenetic Trees/Animal Genes : TreeFamFHDC1
HOVERGENQ9C0D6
HOGENOMQ9C0D6
Homologs : HomoloGeneFHDC1
Homology/Alignments : Family Browser (UCSC)FHDC1
Gene fusions - Rearrangements
Fusion : MitelmanFHDC1/ARFIP1 [4q31.3/4q31.3]  
Fusion: TCGAFHDC1 4q31.3 ARFIP1 4q31.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFHDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FHDC1
dbVarFHDC1
ClinVarFHDC1
1000_GenomesFHDC1 
Exome Variant ServerFHDC1
ExAC (Exome Aggregation Consortium)FHDC1 (select the gene name)
Genetic variants : HAPMAP85462
Genomic Variants (DGV)FHDC1 [DGVbeta]
DECIPHERFHDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFHDC1 
Mutations
ICGC Data PortalFHDC1 
TCGA Data PortalFHDC1 
Broad Tumor PortalFHDC1
OASIS PortalFHDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFHDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFHDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FHDC1
DgiDB (Drug Gene Interaction Database)FHDC1
DoCM (Curated mutations)FHDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FHDC1 (select a term)
intoGenFHDC1
Cancer3DFHDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFHDC1
Genetic Testing Registry FHDC1
NextProtQ9C0D6 [Medical]
TSGene85462
GENETestsFHDC1
Huge Navigator FHDC1 [HugePedia]
snp3D : Map Gene to Disease85462
BioCentury BCIQFHDC1
ClinGenFHDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85462
Chemical/Pharm GKB GenePA162388490
Clinical trialFHDC1
Miscellaneous
canSAR (ICR)FHDC1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFHDC1
EVEXFHDC1
GoPubMedFHDC1
iHOPFHDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:16:02 CEST 2017

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