Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FHL3 (four and a half LIM domains 3)

Identity

Alias_symbol (synonym)SLIM2
Other alias
HGNC (Hugo) FHL3
LocusID (NCBI) 2275
Atlas_Id 50795
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38462442 and ends at 38471187 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FHL3 (1p34.3) / APOA2 (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FHL3   3704
Cards
Entrez_Gene (NCBI)FHL3  2275  four and a half LIM domains 3
AliasesSLIM2
GeneCards (Weizmann)FHL3
Ensembl hg19 (Hinxton)ENSG00000183386 [Gene_View]  chr1:38462442-38471187 [Contig_View]  FHL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183386 [Gene_View]  chr1:38462442-38471187 [Contig_View]  FHL3 [Vega]
ICGC DataPortalENSG00000183386
TCGA cBioPortalFHL3
AceView (NCBI)FHL3
Genatlas (Paris)FHL3
WikiGenes2275
SOURCE (Princeton)FHL3
Genetics Home Reference (NIH)FHL3
Genomic and cartography
GoldenPath hg19 (UCSC)FHL3  -     chr1:38462442-38471187 -  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FHL3  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblFHL3 - 1p34.3 [CytoView hg19]  FHL3 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIFHL3 [Mapview hg19]  FHL3 [Mapview hg38]
OMIM602790   
Gene and transcription
Genbank (Entrez)AF133732 AK290641 AK309179 BC001351 BC011697
RefSeq transcript (Entrez)NM_001243878 NM_004468
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)FHL3
Cluster EST : UnigeneHs.57687 [ NCBI ]
CGAP (NCI)Hs.57687
Alternative Splicing GalleryENSG00000183386
Gene ExpressionFHL3 [ NCBI-GEO ]   FHL3 [ EBI - ARRAY_EXPRESS ]   FHL3 [ SEEK ]   FHL3 [ MEM ]
Gene Expression Viewer (FireBrowse)FHL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2275
GTEX Portal (Tissue expression)FHL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13643   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13643  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13643
Splice isoforms : SwissVarQ13643
PhosPhoSitePlusQ13643
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)FHL3
DMDM Disease mutations2275
Blocks (Seattle)FHL3
PDB (SRS)1WYH    2CUQ    2EHE   
PDB (PDBSum)1WYH    2CUQ    2EHE   
PDB (IMB)1WYH    2CUQ    2EHE   
PDB (RSDB)1WYH    2CUQ    2EHE   
Structural Biology KnowledgeBase1WYH    2CUQ    2EHE   
SCOP (Structural Classification of Proteins)1WYH    2CUQ    2EHE   
CATH (Classification of proteins structures)1WYH    2CUQ    2EHE   
SuperfamilyQ13643
Human Protein AtlasENSG00000183386
Peptide AtlasQ13643
HPRD09101
IPIIPI00014399   
Protein Interaction databases
DIP (DOE-UCLA)Q13643
IntAct (EBI)Q13643
FunCoupENSG00000183386
BioGRIDFHL3
STRING (EMBL)FHL3
ZODIACFHL3
Ontologies - Pathways
QuickGOQ13643
Ontology : AmiGOstress fiber  actin binding  protein binding  nucleus  focal adhesion  muscle organ development  zinc ion binding  Z disc  actin cytoskeleton organization  
Ontology : EGO-EBIstress fiber  actin binding  protein binding  nucleus  focal adhesion  muscle organ development  zinc ion binding  Z disc  actin cytoskeleton organization  
NDEx NetworkFHL3
Atlas of Cancer Signalling NetworkFHL3
Wikipedia pathwaysFHL3
Orthology - Evolution
OrthoDB2275
GeneTree (enSembl)ENSG00000183386
Phylogenetic Trees/Animal Genes : TreeFamFHL3
HOVERGENQ13643
HOGENOMQ13643
Homologs : HomoloGeneFHL3
Homology/Alignments : Family Browser (UCSC)FHL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFHL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FHL3
dbVarFHL3
ClinVarFHL3
1000_GenomesFHL3 
Exome Variant ServerFHL3
ExAC (Exome Aggregation Consortium)FHL3 (select the gene name)
Genetic variants : HAPMAP2275
Genomic Variants (DGV)FHL3 [DGVbeta]
DECIPHER (Syndromes)1:38462442-38471187  ENSG00000183386
CONAN: Copy Number AnalysisFHL3 
Mutations
ICGC Data PortalFHL3 
TCGA Data PortalFHL3 
Broad Tumor PortalFHL3
OASIS PortalFHL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFHL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFHL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FHL3
DgiDB (Drug Gene Interaction Database)FHL3
DoCM (Curated mutations)FHL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FHL3 (select a term)
intoGenFHL3
Cancer3DFHL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602790   
Orphanet
MedgenFHL3
Genetic Testing Registry FHL3
NextProtQ13643 [Medical]
TSGene2275
GENETestsFHL3
Huge Navigator FHL3 [HugePedia]
snp3D : Map Gene to Disease2275
BioCentury BCIQFHL3
ClinGenFHL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2275
Chemical/Pharm GKB GenePA28142
Clinical trialFHL3
Miscellaneous
canSAR (ICR)FHL3 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFHL3
EVEXFHL3
GoPubMedFHL3
iHOPFHL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:01:18 CEST 2017

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