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FHL5 (four and a half LIM domains 5)

Identity

Alias_symbol (synonym)FLJ33049
ACT
dJ393D12.2
Other alias1700027G07Rik
FHL-5
HGNC (Hugo) FHL5
LocusID (NCBI) 9457
Atlas_Id 53971
Location 6q16.1  [Link to chromosome band 6q16]
Location_base_pair Starts at 96562525 and ends at 96618624 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FHL5   17371
Cards
Entrez_Gene (NCBI)FHL5  9457  four and a half LIM domains 5
Aliases1700027G07Rik; ACT; FHL-5; dJ393D12.2
GeneCards (Weizmann)FHL5
Ensembl hg19 (Hinxton)ENSG00000112214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112214 [Gene_View]  ENSG00000112214 [Sequence]  chr6:96562525-96618624 [Contig_View]  FHL5 [Vega]
ICGC DataPortalENSG00000112214
TCGA cBioPortalFHL5
AceView (NCBI)FHL5
Genatlas (Paris)FHL5
WikiGenes9457
SOURCE (Princeton)FHL5
Genetics Home Reference (NIH)FHL5
Genomic and cartography
GoldenPath hg38 (UCSC)FHL5  -     chr6:96562525-96618624 +  6q16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FHL5  -     6q16.1   [Description]    (hg19-Feb_2009)
EnsemblFHL5 - 6q16.1 [CytoView hg19]  FHL5 - 6q16.1 [CytoView hg38]
Mapping of homologs : NCBIFHL5 [Mapview hg19]  FHL5 [Mapview hg38]
OMIM605126   
Gene and transcription
Genbank (Entrez)AF278541 AI425084 AI784680 AK057611 AK058175
RefSeq transcript (Entrez)NM_001170807 NM_001322466 NM_001322467 NM_020482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FHL5
Cluster EST : UnigeneHs.632608 [ NCBI ]
CGAP (NCI)Hs.632608
Alternative Splicing GalleryENSG00000112214
Gene ExpressionFHL5 [ NCBI-GEO ]   FHL5 [ EBI - ARRAY_EXPRESS ]   FHL5 [ SEEK ]   FHL5 [ MEM ]
Gene Expression Viewer (FireBrowse)FHL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9457
GTEX Portal (Tissue expression)FHL5
Human Protein AtlasENSG00000112214-FHL5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TD97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TD97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TD97
Splice isoforms : SwissVarQ5TD97
PhosPhoSitePlusQ5TD97
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)FHL2/3/5    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)FHL5
DMDM Disease mutations9457
Blocks (Seattle)FHL5
PDB (SRS)1X68   
PDB (PDBSum)1X68   
PDB (IMB)1X68   
PDB (RSDB)1X68   
Structural Biology KnowledgeBase1X68   
SCOP (Structural Classification of Proteins)1X68   
CATH (Classification of proteins structures)1X68   
SuperfamilyQ5TD97
Human Protein Atlas [tissue]ENSG00000112214-FHL5 [tissue]
Peptide AtlasQ5TD97
HPRD05497
IPIIPI00550035   IPI00640358   
Protein Interaction databases
DIP (DOE-UCLA)Q5TD97
IntAct (EBI)Q5TD97
FunCoupENSG00000112214
BioGRIDFHL5
STRING (EMBL)FHL5
ZODIACFHL5
Ontologies - Pathways
QuickGOQ5TD97
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  Z disc  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  Z disc  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkFHL5
Atlas of Cancer Signalling NetworkFHL5
Wikipedia pathwaysFHL5
Orthology - Evolution
OrthoDB9457
GeneTree (enSembl)ENSG00000112214
Phylogenetic Trees/Animal Genes : TreeFamFHL5
HOVERGENQ5TD97
HOGENOMQ5TD97
Homologs : HomoloGeneFHL5
Homology/Alignments : Family Browser (UCSC)FHL5
Gene fusions - Rearrangements
Fusion : QuiverFHL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFHL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FHL5
dbVarFHL5
ClinVarFHL5
1000_GenomesFHL5 
Exome Variant ServerFHL5
ExAC (Exome Aggregation Consortium)ENSG00000112214
GNOMAD BrowserENSG00000112214
Varsome BrowserFHL5
Genetic variants : HAPMAP9457
Genomic Variants (DGV)FHL5 [DGVbeta]
DECIPHERFHL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFHL5 
Mutations
ICGC Data PortalFHL5 
TCGA Data PortalFHL5 
Broad Tumor PortalFHL5
OASIS PortalFHL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFHL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFHL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FHL5
DgiDB (Drug Gene Interaction Database)FHL5
DoCM (Curated mutations)FHL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FHL5 (select a term)
intoGenFHL5
Cancer3DFHL5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605126   
Orphanet
DisGeNETFHL5
MedgenFHL5
Genetic Testing Registry FHL5
NextProtQ5TD97 [Medical]
TSGene9457
GENETestsFHL5
Target ValidationFHL5
Huge Navigator FHL5 [HugePedia]
snp3D : Map Gene to Disease9457
BioCentury BCIQFHL5
ClinGenFHL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9457
Chemical/Pharm GKB GenePA134971720
Clinical trialFHL5
Miscellaneous
canSAR (ICR)FHL5 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFHL5
EVEXFHL5
GoPubMedFHL5
iHOPFHL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:06:39 CET 2018

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