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FHOD1 (formin homology 2 domain containing 1)

Identity

Alias_symbol (synonym)FHOS
Other alias
HGNC (Hugo) FHOD1
LocusID (NCBI) 29109
Atlas_Id 52628
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67229389 and ends at 67247522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRC29 (16q22.1) / FHOD1 (16q22.1)NFAT5 (16q22.1) / FHOD1 (16q22.1)LRRC29 16q22.1 / FHOD1 16q22.1
NFAT5 16q22.1 / FHOD1 16q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FHOD1   17905
Cards
Entrez_Gene (NCBI)FHOD1  29109  formin homology 2 domain containing 1
AliasesFHOS
GeneCards (Weizmann)FHOD1
Ensembl hg19 (Hinxton)ENSG00000135723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135723 [Gene_View]  chr16:67229389-67247522 [Contig_View]  FHOD1 [Vega]
ICGC DataPortalENSG00000135723
TCGA cBioPortalFHOD1
AceView (NCBI)FHOD1
Genatlas (Paris)FHOD1
WikiGenes29109
SOURCE (Princeton)FHOD1
Genetics Home Reference (NIH)FHOD1
Genomic and cartography
GoldenPath hg38 (UCSC)FHOD1  -     chr16:67229389-67247522 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FHOD1  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblFHOD1 - 16q22.1 [CytoView hg19]  FHOD1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIFHOD1 [Mapview hg19]  FHOD1 [Mapview hg38]
OMIM606881   
Gene and transcription
Genbank (Entrez)AA609867 AB041046 AB209584 AF113615 AK025992
RefSeq transcript (Entrez)NM_001318202 NM_013241
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FHOD1
Cluster EST : UnigeneHs.95231 [ NCBI ]
CGAP (NCI)Hs.95231
Alternative Splicing GalleryENSG00000135723
Gene ExpressionFHOD1 [ NCBI-GEO ]   FHOD1 [ EBI - ARRAY_EXPRESS ]   FHOD1 [ SEEK ]   FHOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FHOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29109
GTEX Portal (Tissue expression)FHOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y613   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y613  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y613
Splice isoforms : SwissVarQ9Y613
PhosPhoSitePlusQ9Y613
Domaine pattern : Prosite (Expaxy)FH2 (PS51444)    GBD_FH3 (PS51232)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    FH2_Formin    FHDC1    GBD/FH3_dom   
Domain families : Pfam (Sanger)FH2 (PF02181)   
Domain families : Pfam (NCBI)pfam02181   
Domain families : Smart (EMBL)FH2 (SM00498)  
Conserved Domain (NCBI)FHOD1
DMDM Disease mutations29109
Blocks (Seattle)FHOD1
PDB (SRS)3DAD   
PDB (PDBSum)3DAD   
PDB (IMB)3DAD   
PDB (RSDB)3DAD   
Structural Biology KnowledgeBase3DAD   
SCOP (Structural Classification of Proteins)3DAD   
CATH (Classification of proteins structures)3DAD   
SuperfamilyQ9Y613
Human Protein AtlasENSG00000135723
Peptide AtlasQ9Y613
HPRD06049
IPIIPI00001730   IPI00909262   IPI00908778   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y613
IntAct (EBI)Q9Y613
FunCoupENSG00000135723
BioGRIDFHOD1
STRING (EMBL)FHOD1
ZODIACFHOD1
Ontologies - Pathways
QuickGOQ9Y613
Ontology : AmiGOstress fiber  actin binding  protein binding  nucleus  cytoplasm  cytosol  nuclear migration  intercalated disc  membrane  protein domain specific binding  bleb  identical protein binding  protein self-association  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  regulation of stress fiber assembly  positive regulation of stress fiber assembly  establishment of centrosome localization  
Ontology : EGO-EBIstress fiber  actin binding  protein binding  nucleus  cytoplasm  cytosol  nuclear migration  intercalated disc  membrane  protein domain specific binding  bleb  identical protein binding  protein self-association  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  regulation of stress fiber assembly  positive regulation of stress fiber assembly  establishment of centrosome localization  
NDEx NetworkFHOD1
Atlas of Cancer Signalling NetworkFHOD1
Wikipedia pathwaysFHOD1
Orthology - Evolution
OrthoDB29109
GeneTree (enSembl)ENSG00000135723
Phylogenetic Trees/Animal Genes : TreeFamFHOD1
HOVERGENQ9Y613
HOGENOMQ9Y613
Homologs : HomoloGeneFHOD1
Homology/Alignments : Family Browser (UCSC)FHOD1
Gene fusions - Rearrangements
Fusion : MitelmanLRRC29/FHOD1 [16q22.1/16q22.1]  [t(16;16)(q22;q22)]  
Fusion : MitelmanNFAT5/FHOD1 [16q22.1/16q22.1]  [t(16;16)(q22;q22)]  
Fusion: TCGALRRC29 16q22.1 FHOD1 16q22.1 BRCA
Fusion: TCGANFAT5 16q22.1 FHOD1 16q22.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFHOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FHOD1
dbVarFHOD1
ClinVarFHOD1
1000_GenomesFHOD1 
Exome Variant ServerFHOD1
ExAC (Exome Aggregation Consortium)FHOD1 (select the gene name)
Genetic variants : HAPMAP29109
Genomic Variants (DGV)FHOD1 [DGVbeta]
DECIPHERFHOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFHOD1 
Mutations
ICGC Data PortalFHOD1 
TCGA Data PortalFHOD1 
Broad Tumor PortalFHOD1
OASIS PortalFHOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFHOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFHOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FHOD1
DgiDB (Drug Gene Interaction Database)FHOD1
DoCM (Curated mutations)FHOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FHOD1 (select a term)
intoGenFHOD1
Cancer3DFHOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606881   
Orphanet
MedgenFHOD1
Genetic Testing Registry FHOD1
NextProtQ9Y613 [Medical]
TSGene29109
GENETestsFHOD1
Huge Navigator FHOD1 [HugePedia]
snp3D : Map Gene to Disease29109
BioCentury BCIQFHOD1
ClinGenFHOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29109
Chemical/Pharm GKB GenePA28143
Clinical trialFHOD1
Miscellaneous
canSAR (ICR)FHOD1 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFHOD1
EVEXFHOD1
GoPubMedFHOD1
iHOPFHOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:16:02 CEST 2017

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