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FIBCD1 (fibrinogen C domain containing 1)

Identity

Alias_symbol (synonym)FLJ14810
Other alias-
HGNC (Hugo) FIBCD1
LocusID (NCBI) 84929
Atlas_Id 63380
Location 9q34.12  [Link to chromosome band 9q34]
Location_base_pair Starts at 130902438 and ends at 130939068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FIBCD1   25922
Cards
Entrez_Gene (NCBI)FIBCD1  84929  fibrinogen C domain containing 1
Aliases
GeneCards (Weizmann)FIBCD1
Ensembl hg19 (Hinxton)ENSG00000130720 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130720 [Gene_View]  chr9:130902438-130939068 [Contig_View]  FIBCD1 [Vega]
ICGC DataPortalENSG00000130720
TCGA cBioPortalFIBCD1
AceView (NCBI)FIBCD1
Genatlas (Paris)FIBCD1
WikiGenes84929
SOURCE (Princeton)FIBCD1
Genetics Home Reference (NIH)FIBCD1
Genomic and cartography
GoldenPath hg38 (UCSC)FIBCD1  -     chr9:130902438-130939068 -  9q34.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FIBCD1  -     9q34.12   [Description]    (hg19-Feb_2009)
EnsemblFIBCD1 - 9q34.12 [CytoView hg19]  FIBCD1 - 9q34.12 [CytoView hg38]
Mapping of homologs : NCBIFIBCD1 [Mapview hg19]  FIBCD1 [Mapview hg38]
OMIM613357   
Gene and transcription
Genbank (Entrez)AK027716 AK292489 AK300287 AY358311 BC032953
RefSeq transcript (Entrez)NM_001145106 NM_032843
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FIBCD1
Cluster EST : UnigeneHs.133205 [ NCBI ]
CGAP (NCI)Hs.133205
Alternative Splicing GalleryENSG00000130720
Gene ExpressionFIBCD1 [ NCBI-GEO ]   FIBCD1 [ EBI - ARRAY_EXPRESS ]   FIBCD1 [ SEEK ]   FIBCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FIBCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84929
GTEX Portal (Tissue expression)FIBCD1
Human Protein AtlasENSG00000130720-FIBCD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N539   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N539  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N539
Splice isoforms : SwissVarQ8N539
PhosPhoSitePlusQ8N539
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_2    Fibrinogen_a/b/g_C_dom    Fibrinogen_CS   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)FIBCD1
DMDM Disease mutations84929
Blocks (Seattle)FIBCD1
PDB (SRS)4M7F    4M7H   
PDB (PDBSum)4M7F    4M7H   
PDB (IMB)4M7F    4M7H   
PDB (RSDB)4M7F    4M7H   
Structural Biology KnowledgeBase4M7F    4M7H   
SCOP (Structural Classification of Proteins)4M7F    4M7H   
CATH (Classification of proteins structures)4M7F    4M7H   
SuperfamilyQ8N539
Human Protein Atlas [tissue]ENSG00000130720-FIBCD1 [tissue]
Peptide AtlasQ8N539
HPRD16895
IPIIPI00296798   IPI00045741   IPI00643711   IPI00647169   
Protein Interaction databases
DIP (DOE-UCLA)Q8N539
IntAct (EBI)Q8N539
FunCoupENSG00000130720
BioGRIDFIBCD1
STRING (EMBL)FIBCD1
ZODIACFIBCD1
Ontologies - Pathways
QuickGOQ8N539
Ontology : AmiGOprotein binding  chitin binding  membrane  integral component of membrane  metal ion binding  
Ontology : EGO-EBIprotein binding  chitin binding  membrane  integral component of membrane  metal ion binding  
NDEx NetworkFIBCD1
Atlas of Cancer Signalling NetworkFIBCD1
Wikipedia pathwaysFIBCD1
Orthology - Evolution
OrthoDB84929
GeneTree (enSembl)ENSG00000130720
Phylogenetic Trees/Animal Genes : TreeFamFIBCD1
HOVERGENQ8N539
HOGENOMQ8N539
Homologs : HomoloGeneFIBCD1
Homology/Alignments : Family Browser (UCSC)FIBCD1
Gene fusions - Rearrangements
Tumor Fusion PortalFIBCD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFIBCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FIBCD1
dbVarFIBCD1
ClinVarFIBCD1
1000_GenomesFIBCD1 
Exome Variant ServerFIBCD1
ExAC (Exome Aggregation Consortium)ENSG00000130720
GNOMAD BrowserENSG00000130720
Genetic variants : HAPMAP84929
Genomic Variants (DGV)FIBCD1 [DGVbeta]
DECIPHERFIBCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFIBCD1 
Mutations
ICGC Data PortalFIBCD1 
TCGA Data PortalFIBCD1 
Broad Tumor PortalFIBCD1
OASIS PortalFIBCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFIBCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFIBCD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FIBCD1
DgiDB (Drug Gene Interaction Database)FIBCD1
DoCM (Curated mutations)FIBCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FIBCD1 (select a term)
intoGenFIBCD1
Cancer3DFIBCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613357   
Orphanet
DisGeNETFIBCD1
MedgenFIBCD1
Genetic Testing Registry FIBCD1
NextProtQ8N539 [Medical]
TSGene84929
GENETestsFIBCD1
Target ValidationFIBCD1
Huge Navigator FIBCD1 [HugePedia]
snp3D : Map Gene to Disease84929
BioCentury BCIQFIBCD1
ClinGenFIBCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84929
Chemical/Pharm GKB GenePA134891641
Clinical trialFIBCD1
Miscellaneous
canSAR (ICR)FIBCD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFIBCD1
EVEXFIBCD1
GoPubMedFIBCD1
iHOPFIBCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:29:49 CET 2017

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