Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FIBIN (fin bud initiation factor homolog (zebrafish))

Identity

Alias_symbol (synonym)MGC24932
Other alias-
HGNC (Hugo) FIBIN
LocusID (NCBI) 387758
Atlas_Id 63381
Location 11p14.2  [Link to chromosome band 11p14]
Location_base_pair Starts at 27015628 and ends at 27018632 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FIBIN (11p14.2) / C6orf10 (6p21.32)FIBIN (11p14.2) / FIBIN (11p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FIBIN   33747
Cards
Entrez_Gene (NCBI)FIBIN  387758  fin bud initiation factor homolog (zebrafish)
Aliases
GeneCards (Weizmann)FIBIN
Ensembl hg19 (Hinxton) [Gene_View]  chr11:27015628-27018632 [Contig_View]  FIBIN [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:27015628-27018632 [Contig_View]  FIBIN [Vega]
TCGA cBioPortalFIBIN
AceView (NCBI)FIBIN
Genatlas (Paris)FIBIN
WikiGenes387758
SOURCE (Princeton)FIBIN
Genetics Home Reference (NIH)FIBIN
Genomic and cartography
GoldenPath hg19 (UCSC)FIBIN  -     chr11:27015628-27018632 +  11p14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FIBIN  -     11p14.2   [Description]    (hg38-Dec_2013)
EnsemblFIBIN - 11p14.2 [CytoView hg19]  FIBIN - 11p14.2 [CytoView hg38]
Mapping of homologs : NCBIFIBIN [Mapview hg19]  FIBIN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA452778 AB236892 AI755024 AK075535 BC026873
RefSeq transcript (Entrez)NM_203371
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)FIBIN
Cluster EST : UnigeneHs.712718 [ NCBI ]
CGAP (NCI)Hs.712718
Gene ExpressionFIBIN [ NCBI-GEO ]   FIBIN [ EBI - ARRAY_EXPRESS ]   FIBIN [ SEEK ]   FIBIN [ MEM ]
Gene Expression Viewer (FireBrowse)FIBIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387758
GTEX Portal (Tissue expression)FIBIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAL6
Splice isoforms : SwissVarQ8TAL6
PhosPhoSitePlusQ8TAL6
Domains : Interpro (EBI)Fibin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FIBIN
DMDM Disease mutations387758
Blocks (Seattle)FIBIN
SuperfamilyQ8TAL6
Peptide AtlasQ8TAL6
HPRD17366
IPIIPI00152072   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAL6
IntAct (EBI)Q8TAL6
BioGRIDFIBIN
STRING (EMBL)FIBIN
ZODIACFIBIN
Ontologies - Pathways
QuickGOQ8TAL6
Ontology : AmiGOextracellular region  endoplasmic reticulum  Golgi apparatus  
Ontology : EGO-EBIextracellular region  endoplasmic reticulum  Golgi apparatus  
NDEx NetworkFIBIN
Atlas of Cancer Signalling NetworkFIBIN
Wikipedia pathwaysFIBIN
Orthology - Evolution
OrthoDB387758
Phylogenetic Trees/Animal Genes : TreeFamFIBIN
HOVERGENQ8TAL6
HOGENOMQ8TAL6
Homologs : HomoloGeneFIBIN
Homology/Alignments : Family Browser (UCSC)FIBIN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFIBIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FIBIN
dbVarFIBIN
ClinVarFIBIN
1000_GenomesFIBIN 
Exome Variant ServerFIBIN
ExAC (Exome Aggregation Consortium)FIBIN (select the gene name)
Genetic variants : HAPMAP387758
Genomic Variants (DGV)FIBIN [DGVbeta]
DECIPHER (Syndromes)11:27015628-27018632  
CONAN: Copy Number AnalysisFIBIN 
Mutations
ICGC Data PortalFIBIN 
TCGA Data PortalFIBIN 
Broad Tumor PortalFIBIN
OASIS PortalFIBIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFIBIN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFIBIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FIBIN
DgiDB (Drug Gene Interaction Database)FIBIN
DoCM (Curated mutations)FIBIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FIBIN (select a term)
intoGenFIBIN
Cancer3DFIBIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFIBIN
Genetic Testing Registry FIBIN
NextProtQ8TAL6 [Medical]
TSGene387758
GENETestsFIBIN
Huge Navigator FIBIN [HugePedia]
snp3D : Map Gene to Disease387758
BioCentury BCIQFIBIN
ClinGenFIBIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387758
Chemical/Pharm GKB GenePA164720070
Clinical trialFIBIN
Miscellaneous
canSAR (ICR)FIBIN (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFIBIN
EVEXFIBIN
GoPubMedFIBIN
iHOPFIBIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:04:47 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.