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FICD (FIC domain containing)

Identity

Alias_symbol (synonym)HYPE
HIP13
Other aliasUNQ3041
HGNC (Hugo) FICD
LocusID (NCBI) 11153
Atlas_Id 63383
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 108515274 and ends at 108519603 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FICD   18416
Cards
Entrez_Gene (NCBI)FICD  11153  FIC domain containing
AliasesHIP13; HYPE; UNQ3041
GeneCards (Weizmann)FICD
Ensembl hg19 (Hinxton)ENSG00000198855 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198855 [Gene_View]  chr12:108515274-108519603 [Contig_View]  FICD [Vega]
ICGC DataPortalENSG00000198855
TCGA cBioPortalFICD
AceView (NCBI)FICD
Genatlas (Paris)FICD
WikiGenes11153
SOURCE (Princeton)FICD
Genetics Home Reference (NIH)FICD
Genomic and cartography
GoldenPath hg38 (UCSC)FICD  -     chr12:108515274-108519603 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FICD  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblFICD - 12q23.3 [CytoView hg19]  FICD - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIFICD [Mapview hg19]  FICD [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF049611 AK000014 AK026074 AY358992 BC001342
RefSeq transcript (Entrez)NM_007076
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FICD
Cluster EST : UnigeneHs.661891 [ NCBI ]
CGAP (NCI)Hs.661891
Alternative Splicing GalleryENSG00000198855
Gene ExpressionFICD [ NCBI-GEO ]   FICD [ EBI - ARRAY_EXPRESS ]   FICD [ SEEK ]   FICD [ MEM ]
Gene Expression Viewer (FireBrowse)FICD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11153
GTEX Portal (Tissue expression)FICD
Human Protein AtlasENSG00000198855-FICD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVA6
Splice isoforms : SwissVarQ9BVA6
Catalytic activity : Enzyme2.7.7.n1 [ Enzyme-Expasy ]   2.7.7.n12.7.7.n1 [ IntEnz-EBI ]   2.7.7.n1 [ BRENDA ]   2.7.7.n1 [ KEGG ]   
PhosPhoSitePlusQ9BVA6
Domaine pattern : Prosite (Expaxy)FIDO (PS51459)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Fido    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)Fic (PF02661)   
Domain families : Pfam (NCBI)pfam02661   
Conserved Domain (NCBI)FICD
DMDM Disease mutations11153
Blocks (Seattle)FICD
PDB (SRS)4U04    4U07    4U0S    4U0U    4U0Z   
PDB (PDBSum)4U04    4U07    4U0S    4U0U    4U0Z   
PDB (IMB)4U04    4U07    4U0S    4U0U    4U0Z   
PDB (RSDB)4U04    4U07    4U0S    4U0U    4U0Z   
Structural Biology KnowledgeBase4U04    4U07    4U0S    4U0U    4U0Z   
SCOP (Structural Classification of Proteins)4U04    4U07    4U0S    4U0U    4U0Z   
CATH (Classification of proteins structures)4U04    4U07    4U0S    4U0U    4U0Z   
SuperfamilyQ9BVA6
Human Protein Atlas [tissue]ENSG00000198855-FICD [tissue]
Peptide AtlasQ9BVA6
HPRD13723
IPIIPI00026635   IPI01022635   IPI01022958   IPI01021899   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVA6
IntAct (EBI)Q9BVA6
FunCoupENSG00000198855
BioGRIDFICD
STRING (EMBL)FICD
ZODIACFICD
Ontologies - Pathways
QuickGOQ9BVA6
Ontology : AmiGOATP binding  integral component of membrane  protein adenylylation  negative regulation of GTPase activity  protein adenylyltransferase activity  
Ontology : EGO-EBIATP binding  integral component of membrane  protein adenylylation  negative regulation of GTPase activity  protein adenylyltransferase activity  
NDEx NetworkFICD
Atlas of Cancer Signalling NetworkFICD
Wikipedia pathwaysFICD
Orthology - Evolution
OrthoDB11153
GeneTree (enSembl)ENSG00000198855
Phylogenetic Trees/Animal Genes : TreeFamFICD
HOVERGENQ9BVA6
HOGENOMQ9BVA6
Homologs : HomoloGeneFICD
Homology/Alignments : Family Browser (UCSC)FICD
Gene fusions - Rearrangements
Fusion: Tumor Portal FICD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFICD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FICD
dbVarFICD
ClinVarFICD
1000_GenomesFICD 
Exome Variant ServerFICD
ExAC (Exome Aggregation Consortium)ENSG00000198855
GNOMAD BrowserENSG00000198855
Genetic variants : HAPMAP11153
Genomic Variants (DGV)FICD [DGVbeta]
DECIPHERFICD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFICD 
Mutations
ICGC Data PortalFICD 
TCGA Data PortalFICD 
Broad Tumor PortalFICD
OASIS PortalFICD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFICD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFICD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FICD
DgiDB (Drug Gene Interaction Database)FICD
DoCM (Curated mutations)FICD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FICD (select a term)
intoGenFICD
Cancer3DFICD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFICD
Genetic Testing Registry FICD
NextProtQ9BVA6 [Medical]
TSGene11153
GENETestsFICD
Target ValidationFICD
Huge Navigator FICD [HugePedia]
snp3D : Map Gene to Disease11153
BioCentury BCIQFICD
ClinGenFICD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11153
Chemical/Pharm GKB GenePA162388517
Clinical trialFICD
Miscellaneous
canSAR (ICR)FICD (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFICD
EVEXFICD
GoPubMedFICD
iHOPFICD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:47:46 CET 2017

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