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FIGN (fidgetin, microtubule severing factor)

Identity

Alias_namesfidgetin
Other alias-
HGNC (Hugo) FIGN
LocusID (NCBI) 55137
Atlas_Id 54988
Location 2q24.3  [Link to chromosome band 2q24]
Location_base_pair Starts at 163604951 and ends at 163736007 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FIGN   13285
Cards
Entrez_Gene (NCBI)FIGN  55137  fidgetin, microtubule severing factor
Aliases
GeneCards (Weizmann)FIGN
Ensembl hg19 (Hinxton)ENSG00000182263 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182263 [Gene_View]  chr2:163604951-163736007 [Contig_View]  FIGN [Vega]
ICGC DataPortalENSG00000182263
TCGA cBioPortalFIGN
AceView (NCBI)FIGN
Genatlas (Paris)FIGN
WikiGenes55137
SOURCE (Princeton)FIGN
Genetics Home Reference (NIH)FIGN
Genomic and cartography
GoldenPath hg38 (UCSC)FIGN  -     chr2:163604951-163736007 -  2q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FIGN  -     2q24.3   [Description]    (hg19-Feb_2009)
EnsemblFIGN - 2q24.3 [CytoView hg19]  FIGN - 2q24.3 [CytoView hg38]
Mapping of homologs : NCBIFIGN [Mapview hg19]  FIGN [Mapview hg38]
OMIM605295   
Gene and transcription
Genbank (Entrez)AK001267 AK025747 AK125324 BC148649 BC156958
RefSeq transcript (Entrez)NM_001321825 NM_018086
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FIGN
Cluster EST : UnigeneHs.593650 [ NCBI ]
CGAP (NCI)Hs.593650
Alternative Splicing GalleryENSG00000182263
Gene ExpressionFIGN [ NCBI-GEO ]   FIGN [ EBI - ARRAY_EXPRESS ]   FIGN [ SEEK ]   FIGN [ MEM ]
Gene Expression Viewer (FireBrowse)FIGN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55137
GTEX Portal (Tissue expression)FIGN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HY92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HY92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HY92
Splice isoforms : SwissVarQ5HY92
PhosPhoSitePlusQ5HY92
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    ATPase_AAA_CS    P-loop_NTPase    Vps4_C   
Domain families : Pfam (Sanger)AAA (PF00004)    Vps4_C (PF09336)   
Domain families : Pfam (NCBI)pfam00004    pfam09336   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)FIGN
DMDM Disease mutations55137
Blocks (Seattle)FIGN
SuperfamilyQ5HY92
Human Protein AtlasENSG00000182263
Peptide AtlasQ5HY92
HPRD07287
IPIIPI00164946   IPI00916307   
Protein Interaction databases
DIP (DOE-UCLA)Q5HY92
IntAct (EBI)Q5HY92
FunCoupENSG00000182263
BioGRIDFIGN
STRING (EMBL)FIGN
ZODIACFIGN
Ontologies - Pathways
QuickGOQ5HY92
Ontology : AmiGOATP binding  nucleus  cytoplasm  microtubule organizing center  microtubule  cell cycle  protein C-terminus binding  microtubule-severing ATPase activity  regulation of double-strand break repair via homologous recombination  nuclear matrix  cytoplasmic microtubule organization  cell division  
Ontology : EGO-EBIATP binding  nucleus  cytoplasm  microtubule organizing center  microtubule  cell cycle  protein C-terminus binding  microtubule-severing ATPase activity  regulation of double-strand break repair via homologous recombination  nuclear matrix  cytoplasmic microtubule organization  cell division  
NDEx NetworkFIGN
Atlas of Cancer Signalling NetworkFIGN
Wikipedia pathwaysFIGN
Orthology - Evolution
OrthoDB55137
GeneTree (enSembl)ENSG00000182263
Phylogenetic Trees/Animal Genes : TreeFamFIGN
HOVERGENQ5HY92
HOGENOMQ5HY92
Homologs : HomoloGeneFIGN
Homology/Alignments : Family Browser (UCSC)FIGN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFIGN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FIGN
dbVarFIGN
ClinVarFIGN
1000_GenomesFIGN 
Exome Variant ServerFIGN
ExAC (Exome Aggregation Consortium)FIGN (select the gene name)
Genetic variants : HAPMAP55137
Genomic Variants (DGV)FIGN [DGVbeta]
DECIPHERFIGN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFIGN 
Mutations
ICGC Data PortalFIGN 
TCGA Data PortalFIGN 
Broad Tumor PortalFIGN
OASIS PortalFIGN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFIGN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFIGN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FIGN
DgiDB (Drug Gene Interaction Database)FIGN
DoCM (Curated mutations)FIGN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FIGN (select a term)
intoGenFIGN
Cancer3DFIGN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605295   
Orphanet
MedgenFIGN
Genetic Testing Registry FIGN
NextProtQ5HY92 [Medical]
TSGene55137
GENETestsFIGN
Huge Navigator FIGN [HugePedia]
snp3D : Map Gene to Disease55137
BioCentury BCIQFIGN
ClinGenFIGN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55137
Chemical/Pharm GKB GenePA28147
Clinical trialFIGN
Miscellaneous
canSAR (ICR)FIGN (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFIGN
EVEXFIGN
GoPubMedFIGN
iHOPFIGN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:16:03 CEST 2017

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