Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FIGNL1 (fidgetin like 1)

Identity

Alias_namesfidgetin-like 1
Other alias-
HGNC (Hugo) FIGNL1
LocusID (NCBI) 63979
Atlas_Id 53507
Location 7p12.1  [Link to chromosome band 7p12]
Location_base_pair Starts at 50511827 and ends at 50518088 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FIGNL1   13286
Cards
Entrez_Gene (NCBI)FIGNL1  63979  fidgetin like 1
Aliases
GeneCards (Weizmann)FIGNL1
Ensembl hg19 (Hinxton)ENSG00000132436 [Gene_View]  chr7:50511827-50518088 [Contig_View]  FIGNL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132436 [Gene_View]  chr7:50511827-50518088 [Contig_View]  FIGNL1 [Vega]
ICGC DataPortalENSG00000132436
TCGA cBioPortalFIGNL1
AceView (NCBI)FIGNL1
Genatlas (Paris)FIGNL1
WikiGenes63979
SOURCE (Princeton)FIGNL1
Genetics Home Reference (NIH)FIGNL1
Genomic and cartography
GoldenPath hg19 (UCSC)FIGNL1  -     chr7:50511827-50518088 -  7p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FIGNL1  -     7p12.1   [Description]    (hg38-Dec_2013)
EnsemblFIGNL1 - 7p12.1 [CytoView hg19]  FIGNL1 - 7p12.1 [CytoView hg38]
Mapping of homologs : NCBIFIGNL1 [Mapview hg19]  FIGNL1 [Mapview hg38]
OMIM615383   
Gene and transcription
Genbank (Entrez)AK023142 AK023411 AK027537 AK308136 AL834387
RefSeq transcript (Entrez)NM_001042762 NM_001287492 NM_001287493 NM_001287494 NM_001287495 NM_001287496 NM_022116
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929330
Consensus coding sequences : CCDS (NCBI)FIGNL1
Cluster EST : UnigeneHs.137516 [ NCBI ]
CGAP (NCI)Hs.137516
Alternative Splicing GalleryENSG00000132436
Gene ExpressionFIGNL1 [ NCBI-GEO ]   FIGNL1 [ EBI - ARRAY_EXPRESS ]   FIGNL1 [ SEEK ]   FIGNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)FIGNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63979
GTEX Portal (Tissue expression)FIGNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIW4
Splice isoforms : SwissVarQ6PIW4
PhosPhoSitePlusQ6PIW4
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    ATPase_AAA_CS    P-loop_NTPase    Vps4_C   
Domain families : Pfam (Sanger)AAA (PF00004)    Vps4_C (PF09336)   
Domain families : Pfam (NCBI)pfam00004    pfam09336   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)FIGNL1
DMDM Disease mutations63979
Blocks (Seattle)FIGNL1
PDB (SRS)3D8B   
PDB (PDBSum)3D8B   
PDB (IMB)3D8B   
PDB (RSDB)3D8B   
Structural Biology KnowledgeBase3D8B   
SCOP (Structural Classification of Proteins)3D8B   
CATH (Classification of proteins structures)3D8B   
SuperfamilyQ6PIW4
Human Protein AtlasENSG00000132436
Peptide AtlasQ6PIW4
HPRD10958
IPIIPI00335421   IPI00855706   IPI00926652   IPI00926892   IPI00926248   IPI00926473   IPI00927603   IPI00927844   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIW4
IntAct (EBI)Q6PIW4
FunCoupENSG00000132436
BioGRIDFIGNL1
STRING (EMBL)FIGNL1
ZODIACFIGNL1
Ontologies - Pathways
QuickGOQ6PIW4
Ontology : AmiGOnuclear chromosome  magnesium ion binding  osteoblast differentiation  protein binding  ATP binding  nucleus  cytoplasm  microtubule-severing ATPase activity  regulation of double-strand break repair via homologous recombination  hydrolase activity  cytoplasmic microtubule organization  osteoblast proliferation  negative regulation of apoptotic process  ATP metabolic process  regulation of cell cycle  extracellular exosome  cellular response to ionizing radiation  negative regulation of intrinsic apoptotic signaling pathway  
Ontology : EGO-EBInuclear chromosome  magnesium ion binding  osteoblast differentiation  protein binding  ATP binding  nucleus  cytoplasm  microtubule-severing ATPase activity  regulation of double-strand break repair via homologous recombination  hydrolase activity  cytoplasmic microtubule organization  osteoblast proliferation  negative regulation of apoptotic process  ATP metabolic process  regulation of cell cycle  extracellular exosome  cellular response to ionizing radiation  negative regulation of intrinsic apoptotic signaling pathway  
NDEx NetworkFIGNL1
Atlas of Cancer Signalling NetworkFIGNL1
Wikipedia pathwaysFIGNL1
Orthology - Evolution
OrthoDB63979
GeneTree (enSembl)ENSG00000132436
Phylogenetic Trees/Animal Genes : TreeFamFIGNL1
HOVERGENQ6PIW4
HOGENOMQ6PIW4
Homologs : HomoloGeneFIGNL1
Homology/Alignments : Family Browser (UCSC)FIGNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFIGNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FIGNL1
dbVarFIGNL1
ClinVarFIGNL1
1000_GenomesFIGNL1 
Exome Variant ServerFIGNL1
ExAC (Exome Aggregation Consortium)FIGNL1 (select the gene name)
Genetic variants : HAPMAP63979
Genomic Variants (DGV)FIGNL1 [DGVbeta]
DECIPHER (Syndromes)7:50511827-50518088  ENSG00000132436
CONAN: Copy Number AnalysisFIGNL1 
Mutations
ICGC Data PortalFIGNL1 
TCGA Data PortalFIGNL1 
Broad Tumor PortalFIGNL1
OASIS PortalFIGNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFIGNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFIGNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FIGNL1
DgiDB (Drug Gene Interaction Database)FIGNL1
DoCM (Curated mutations)FIGNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FIGNL1 (select a term)
intoGenFIGNL1
Cancer3DFIGNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615383   
Orphanet
MedgenFIGNL1
Genetic Testing Registry FIGNL1
NextProtQ6PIW4 [Medical]
TSGene63979
GENETestsFIGNL1
Huge Navigator FIGNL1 [HugePedia]
snp3D : Map Gene to Disease63979
BioCentury BCIQFIGNL1
ClinGenFIGNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63979
Chemical/Pharm GKB GenePA28148
Clinical trialFIGNL1
Miscellaneous
canSAR (ICR)FIGNL1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFIGNL1
EVEXFIGNL1
GoPubMedFIGNL1
iHOPFIGNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:06:12 CET 2017

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