Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FIGNL2 (fidgetin like 2)

Identity

Alias_namesfidgetin-like 2
Other alias-
HGNC (Hugo) FIGNL2
LocusID (NCBI) 401720
Atlas_Id 55570
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 51817892 and ends at 51831917 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FIGNL2   13287
Cards
Entrez_Gene (NCBI)FIGNL2  401720  fidgetin like 2
Aliases
GeneCards (Weizmann)FIGNL2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:51817892-51831917 [Contig_View]  FIGNL2 [Vega]
TCGA cBioPortalFIGNL2
AceView (NCBI)FIGNL2
Genatlas (Paris)FIGNL2
WikiGenes401720
SOURCE (Princeton)FIGNL2
Genetics Home Reference (NIH)FIGNL2
Genomic and cartography
GoldenPath hg38 (UCSC)FIGNL2  -     chr12:51817892-51831917 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FIGNL2  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblFIGNL2 - 12q13.13 [CytoView hg19]  FIGNL2 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIFIGNL2 [Mapview hg19]  FIGNL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129980 BC156212 BM676965
RefSeq transcript (Entrez)NM_001013690
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FIGNL2
Cluster EST : UnigeneHs.648218 [ NCBI ]
CGAP (NCI)Hs.648218
Gene ExpressionFIGNL2 [ NCBI-GEO ]   FIGNL2 [ EBI - ARRAY_EXPRESS ]   FIGNL2 [ SEEK ]   FIGNL2 [ MEM ]
Gene Expression Viewer (FireBrowse)FIGNL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401720
GTEX Portal (Tissue expression)FIGNL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMB9
Splice isoforms : SwissVarA6NMB9
PhosPhoSitePlusA6NMB9
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)FIGNL2
DMDM Disease mutations401720
Blocks (Seattle)FIGNL2
SuperfamilyA6NMB9
Peptide AtlasA6NMB9
HPRD18433
IPIIPI00783444   
Protein Interaction databases
DIP (DOE-UCLA)A6NMB9
IntAct (EBI)A6NMB9
BioGRIDFIGNL2
STRING (EMBL)FIGNL2
ZODIACFIGNL2
Ontologies - Pathways
QuickGOA6NMB9
Ontology : AmiGOATP binding  nucleus  microtubule-severing ATPase activity  regulation of double-strand break repair via homologous recombination  cytoplasmic microtubule organization  
Ontology : EGO-EBIATP binding  nucleus  microtubule-severing ATPase activity  regulation of double-strand break repair via homologous recombination  cytoplasmic microtubule organization  
NDEx NetworkFIGNL2
Atlas of Cancer Signalling NetworkFIGNL2
Wikipedia pathwaysFIGNL2
Orthology - Evolution
OrthoDB401720
Phylogenetic Trees/Animal Genes : TreeFamFIGNL2
HOVERGENA6NMB9
HOGENOMA6NMB9
Homologs : HomoloGeneFIGNL2
Homology/Alignments : Family Browser (UCSC)FIGNL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFIGNL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FIGNL2
dbVarFIGNL2
ClinVarFIGNL2
1000_GenomesFIGNL2 
Exome Variant ServerFIGNL2
ExAC (Exome Aggregation Consortium)FIGNL2 (select the gene name)
Genetic variants : HAPMAP401720
Genomic Variants (DGV)FIGNL2 [DGVbeta]
DECIPHERFIGNL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFIGNL2 
Mutations
ICGC Data PortalFIGNL2 
TCGA Data PortalFIGNL2 
Broad Tumor PortalFIGNL2
OASIS PortalFIGNL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFIGNL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FIGNL2
DgiDB (Drug Gene Interaction Database)FIGNL2
DoCM (Curated mutations)FIGNL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FIGNL2 (select a term)
intoGenFIGNL2
Cancer3DFIGNL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFIGNL2
Genetic Testing Registry FIGNL2
NextProtA6NMB9 [Medical]
TSGene401720
GENETestsFIGNL2
Target ValidationFIGNL2
Huge Navigator FIGNL2 [HugePedia]
snp3D : Map Gene to Disease401720
BioCentury BCIQFIGNL2
ClinGenFIGNL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401720
Chemical/Pharm GKB GenePA162388579
Clinical trialFIGNL2
Miscellaneous
canSAR (ICR)FIGNL2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFIGNL2
EVEXFIGNL2
GoPubMedFIGNL2
iHOPFIGNL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:00 CEST 2017

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