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FILIP1 (filamin A interacting protein 1)

Identity

Alias_symbol (synonym)FILIP
KIAA1275
Other alias
HGNC (Hugo) FILIP1
LocusID (NCBI) 27145
Atlas_Id 53944
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 75308084 and ends at 75493914 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FILIP1 (6q14.1) / FILIP1 (6q14.1)TMEM30A (6q14.1) / FILIP1 (6q14.1)TMEM30A 6q14.1 / FILIP1 6q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  TMEM30A/FILIP1 (6q14)


External links

Nomenclature
HGNC (Hugo)FILIP1   21015
Cards
Entrez_Gene (NCBI)FILIP1  27145  filamin A interacting protein 1
AliasesFILIP
GeneCards (Weizmann)FILIP1
Ensembl hg19 (Hinxton)ENSG00000118407 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118407 [Gene_View]  ENSG00000118407 [Sequence]  chr6:75308084-75493914 [Contig_View]  FILIP1 [Vega]
ICGC DataPortalENSG00000118407
TCGA cBioPortalFILIP1
AceView (NCBI)FILIP1
Genatlas (Paris)FILIP1
WikiGenes27145
SOURCE (Princeton)FILIP1
Genetics Home Reference (NIH)FILIP1
Genomic and cartography
GoldenPath hg38 (UCSC)FILIP1  -     chr6:75308084-75493914 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FILIP1  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblFILIP1 - 6q14.1 [CytoView hg19]  FILIP1 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBIFILIP1 [Mapview hg19]  FILIP1 [Mapview hg38]
OMIM607307   
Gene and transcription
Genbank (Entrez)AB033101 AB086011 AK001570 AK027705 AK097021
RefSeq transcript (Entrez)NM_001289987 NM_001300866 NM_015687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FILIP1
Cluster EST : UnigeneHs.696158 [ NCBI ]
CGAP (NCI)Hs.696158
Alternative Splicing GalleryENSG00000118407
Gene ExpressionFILIP1 [ NCBI-GEO ]   FILIP1 [ EBI - ARRAY_EXPRESS ]   FILIP1 [ SEEK ]   FILIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)FILIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27145
GTEX Portal (Tissue expression)FILIP1
Human Protein AtlasENSG00000118407-FILIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7B0
Splice isoforms : SwissVarQ7Z7B0
PhosPhoSitePlusQ7Z7B0
Domains : Interpro (EBI)Cortactin-binding_p2_N   
Domain families : Pfam (Sanger)CortBP2 (PF09727)   
Domain families : Pfam (NCBI)pfam09727   
Conserved Domain (NCBI)FILIP1
DMDM Disease mutations27145
Blocks (Seattle)FILIP1
SuperfamilyQ7Z7B0
Human Protein Atlas [tissue]ENSG00000118407-FILIP1 [tissue]
Peptide AtlasQ7Z7B0
HPRD09533
IPIIPI00297210   IPI00745798   IPI00642180   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7B0
IntAct (EBI)Q7Z7B0
FunCoupENSG00000118407
BioGRIDFILIP1
STRING (EMBL)FILIP1
ZODIACFILIP1
Ontologies - Pathways
QuickGOQ7Z7B0
Ontology : AmiGOnucleolus  cytoplasm  plasma membrane  actin cytoskeleton  actin cytoskeleton  
Ontology : EGO-EBInucleolus  cytoplasm  plasma membrane  actin cytoskeleton  actin cytoskeleton  
NDEx NetworkFILIP1
Atlas of Cancer Signalling NetworkFILIP1
Wikipedia pathwaysFILIP1
Orthology - Evolution
OrthoDB27145
GeneTree (enSembl)ENSG00000118407
Phylogenetic Trees/Animal Genes : TreeFamFILIP1
HOVERGENQ7Z7B0
HOGENOMQ7Z7B0
Homologs : HomoloGeneFILIP1
Homology/Alignments : Family Browser (UCSC)FILIP1
Gene fusions - Rearrangements
Fusion : MitelmanTMEM30A/FILIP1 [6q14.1/6q14.1]  [t(6;6)(q14;q14)]  
Fusion PortalTMEM30A 6q14.1 FILIP1 6q14.1 LUSC
Fusion : QuiverFILIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFILIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FILIP1
dbVarFILIP1
ClinVarFILIP1
1000_GenomesFILIP1 
Exome Variant ServerFILIP1
ExAC (Exome Aggregation Consortium)ENSG00000118407
GNOMAD BrowserENSG00000118407
Varsome BrowserFILIP1
Genetic variants : HAPMAP27145
Genomic Variants (DGV)FILIP1 [DGVbeta]
DECIPHERFILIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFILIP1 
Mutations
ICGC Data PortalFILIP1 
TCGA Data PortalFILIP1 
Broad Tumor PortalFILIP1
OASIS PortalFILIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFILIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFILIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FILIP1
DgiDB (Drug Gene Interaction Database)FILIP1
DoCM (Curated mutations)FILIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FILIP1 (select a term)
intoGenFILIP1
Cancer3DFILIP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607307   
Orphanet
DisGeNETFILIP1
MedgenFILIP1
Genetic Testing Registry FILIP1
NextProtQ7Z7B0 [Medical]
TSGene27145
GENETestsFILIP1
Target ValidationFILIP1
Huge Navigator FILIP1 [HugePedia]
snp3D : Map Gene to Disease27145
BioCentury BCIQFILIP1
ClinGenFILIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27145
Chemical/Pharm GKB GenePA134992638
Clinical trialFILIP1
Miscellaneous
canSAR (ICR)FILIP1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFILIP1
EVEXFILIP1
GoPubMedFILIP1
iHOPFILIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:06:41 CET 2018

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