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FIP1L1 (factor interacting with PAPOLA and CPSF1)

Identity

Other namesFIP1
Rhe
hFip1
HGNC (Hugo) FIP1L1
LocusID (NCBI) 81608
Location 4q12
Location_base_pair Starts at 54243820 and ends at 54326103 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias 11q23ChildAMLID1615 11q23ID1030

External links

Nomenclature
HGNC (Hugo)FIP1L1   19124
Cards
Entrez_Gene (NCBI)FIP1L1  81608  factor interacting with PAPOLA and CPSF1
GeneCards (Weizmann)FIP1L1
Ensembl (Hinxton)ENSG00000145216 [Gene_View]  chr4:54243820-54326103 [Contig_View]  FIP1L1 [Vega]
ICGC DataPortalENSG00000145216
AceView (NCBI)FIP1L1
Genatlas (Paris)FIP1L1
WikiGenes81608
SOURCE (Princeton)NM_001134937 NM_001134938 NM_030917
Genomic and cartography
GoldenPath (UCSC)FIP1L1  -  4q12   chr4:54243820-54326103 +  4q12   [Description]    (hg19-Feb_2009)
EnsemblFIP1L1 - 4q12 [CytoView]
Mapping of homologs : NCBIFIP1L1 [Mapview]
OMIM607686   
Gene and transcription
Genbank (Entrez)AF161429 AK090938 AK123992 AK295737 AK300398
RefSeq transcript (Entrez)NM_001134937 NM_001134938 NM_030917
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_008644 NT_022853 NW_001838913 NW_004929319
Consensus coding sequences : CCDS (NCBI)FIP1L1
Cluster EST : UnigeneHs.624245 [ NCBI ]
CGAP (NCI)Hs.624245
Alternative Splicing : Fast-db (Paris)GSHG0033966
Alternative Splicing GalleryENSG00000145216
Gene ExpressionFIP1L1 [ NCBI-GEO ]     FIP1L1 [ SEEK ]   FIP1L1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UN15 (Uniprot)
NextProtQ6UN15  [Medical]
With graphics : InterProQ6UN15
Splice isoforms : SwissVarQ6UN15 (Swissvar)
Domains : Interpro (EBI)Fip1   
Related proteins : CluSTrQ6UN15
Domain families : Pfam (Sanger)Fip1 (PF05182)   
Domain families : Pfam (NCBI)pfam05182   
DMDM Disease mutations81608
Blocks (Seattle)Q6UN15
Human Protein AtlasENSG00000145216
Peptide AtlasQ6UN15
HPRD09646
IPIIPI00395337   IPI00008449   IPI00965581   IPI00166352   IPI00658114   IPI00965445   IPI00964076   IPI00968267   
Protein Interaction databases
DIP (DOE-UCLA)Q6UN15
IntAct (EBI)Q6UN15
FunCoupENSG00000145216
BioGRIDFIP1L1
IntegromeDBFIP1L1
STRING (EMBL)FIP1L1
Ontologies - Pathways
QuickGOQ6UN15
Ontology : AmiGOnucleus  nucleolus  mRNA cleavage and polyadenylation specificity factor complex  mRNA processing  poly(A) RNA binding  
Ontology : EGO-EBInucleus  nucleolus  mRNA cleavage and polyadenylation specificity factor complex  mRNA processing  poly(A) RNA binding  
Pathways : KEGGmRNA surveillance pathway   
Protein Interaction DatabaseFIP1L1
Wikipedia pathwaysFIP1L1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FIP1L1
SNP (GeneSNP Utah)FIP1L1
SNP : HGBaseFIP1L1
Genetic variants : HAPMAPFIP1L1
1000_GenomesFIP1L1 
ICGC programENSG00000145216 
Cancer Gene: CensusFIP1L1 
CONAN: Copy Number AnalysisFIP1L1 
Somatic Mutations in Cancer : COSMICFIP1L1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)4:54243820-54326103
Mutations and Diseases : HGMDFIP1L1
OMIM607686   
MedgenFIP1L1
GENETestsFIP1L1
Disease Genetic AssociationFIP1L1
Huge Navigator FIP1L1 [HugePedia]  FIP1L1 [HugeCancerGEM]
Genomic VariantsFIP1L1  FIP1L1 [DGVbeta]
Exome VariantFIP1L1
dbVarFIP1L1
ClinVarFIP1L1
snp3D : Map Gene to Disease81608
General knowledge
Homologs : HomoloGeneFIP1L1
Homology/Alignments : Family Browser (UCSC)FIP1L1
Phylogenetic Trees/Animal Genes : TreeFamFIP1L1
Chemical/Protein Interactions : CTD81608
Chemical/Pharm GKB GenePA134875694
Clinical trialFIP1L1
Cancer Resource (Charite)ENSG00000145216
Other databases
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
CoreMineFIP1L1
GoPubMedFIP1L1
iHOPFIP1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:25:57 CET 2014

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