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FIRRE (firre intergenic repeating RNA element)

Identity

Alias_namesfirre intergenic RNA
Alias_symbol (synonym)LINC01200
Other alias
HGNC (Hugo) FIRRE
LocusID (NCBI) 286467
Atlas_Id 63387
Location Xq26.2  [Link to chromosome band Xq26]
Location_base_pair Starts at 131702650 and ends at 131830643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FIRRE   49627
Cards
Entrez_Gene (NCBI)FIRRE  286467  firre intergenic repeating RNA element
AliasesLINC01200
GeneCards (Weizmann)FIRRE
Ensembl hg19 (Hinxton)ENSG00000213468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213468 [Gene_View]  chrX:131702650-131830643 [Contig_View]  FIRRE [Vega]
ICGC DataPortalENSG00000213468
TCGA cBioPortalFIRRE
AceView (NCBI)FIRRE
Genatlas (Paris)FIRRE
WikiGenes286467
SOURCE (Princeton)FIRRE
Genetics Home Reference (NIH)FIRRE
Genomic and cartography
GoldenPath hg38 (UCSC)FIRRE  -     chrX:131702650-131830643 -  Xq26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FIRRE  -     Xq26.2   [Description]    (hg19-Feb_2009)
EnsemblFIRRE - Xq26.2 [CytoView hg19]  FIRRE - Xq26.2 [CytoView hg38]
Mapping of homologs : NCBIFIRRE [Mapview hg19]  FIRRE [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097911 BC038558 BC131554
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FIRRE
Cluster EST : UnigeneHs.720385 [ NCBI ]
CGAP (NCI)Hs.720385
Alternative Splicing GalleryENSG00000213468
Gene ExpressionFIRRE [ NCBI-GEO ]   FIRRE [ EBI - ARRAY_EXPRESS ]   FIRRE [ SEEK ]   FIRRE [ MEM ]
Gene Expression Viewer (FireBrowse)FIRRE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)286467
GTEX Portal (Tissue expression)FIRRE
Human Protein AtlasENSG00000213468-FIRRE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FIRRE
DMDM Disease mutations286467
Blocks (Seattle)FIRRE
Human Protein Atlas [tissue]ENSG00000213468-FIRRE [tissue]
IPIIPI00739913   
Protein Interaction databases
FunCoupENSG00000213468
BioGRIDFIRRE
STRING (EMBL)FIRRE
ZODIACFIRRE
Ontologies - Pathways
Huge Navigator FIRRE [HugePedia]
snp3D : Map Gene to Disease286467
BioCentury BCIQFIRRE
ClinGenFIRRE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286467
Clinical trialFIRRE
Miscellaneous
canSAR (ICR)FIRRE (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFIRRE
EVEXFIRRE
GoPubMedFIRRE
iHOPFIRRE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:59:35 CET 2017

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