Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FITM1 (fat storage inducing transmembrane protein 1)

Identity

Alias_symbol (synonym)FIT1
Other alias
HGNC (Hugo) FITM1
LocusID (NCBI) 161247
Atlas_Id 63388
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24131466 and ends at 24132849 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FITM1   33714
Cards
Entrez_Gene (NCBI)FITM1  161247  fat storage inducing transmembrane protein 1
AliasesFIT1
GeneCards (Weizmann)FITM1
Ensembl hg19 (Hinxton)ENSG00000139914 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139914 [Gene_View]  chr14:24131466-24132849 [Contig_View]  FITM1 [Vega]
ICGC DataPortalENSG00000139914
TCGA cBioPortalFITM1
AceView (NCBI)FITM1
Genatlas (Paris)FITM1
WikiGenes161247
SOURCE (Princeton)FITM1
Genetics Home Reference (NIH)FITM1
Genomic and cartography
GoldenPath hg38 (UCSC)FITM1  -     chr14:24131466-24132849 +  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FITM1  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblFITM1 - 14q12 [CytoView hg19]  FITM1 - 14q12 [CytoView hg38]
Mapping of homologs : NCBIFITM1 [Mapview hg19]  FITM1 [Mapview hg38]
OMIM612028   
Gene and transcription
Genbank (Entrez)BC042179 BC139911 BI114004 BQ574746 BX347190
RefSeq transcript (Entrez)NM_203402
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FITM1
Cluster EST : UnigeneHs.128060 [ NCBI ]
CGAP (NCI)Hs.128060
Alternative Splicing GalleryENSG00000139914
Gene ExpressionFITM1 [ NCBI-GEO ]   FITM1 [ EBI - ARRAY_EXPRESS ]   FITM1 [ SEEK ]   FITM1 [ MEM ]
Gene Expression Viewer (FireBrowse)FITM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161247
GTEX Portal (Tissue expression)FITM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5D6W6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5D6W6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5D6W6
Splice isoforms : SwissVarA5D6W6
PhosPhoSitePlusA5D6W6
Domains : Interpro (EBI)FIT   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FITM1
DMDM Disease mutations161247
Blocks (Seattle)FITM1
SuperfamilyA5D6W6
Human Protein AtlasENSG00000139914
Peptide AtlasA5D6W6
HPRD17312
IPIIPI00402145   IPI00884939   
Protein Interaction databases
DIP (DOE-UCLA)A5D6W6
IntAct (EBI)A5D6W6
FunCoupENSG00000139914
BioGRIDFITM1
STRING (EMBL)FITM1
ZODIACFITM1
Ontologies - Pathways
QuickGOA5D6W6
Ontology : AmiGOmolecular_function  endoplasmic reticulum membrane  endoplasmic reticulum membrane  phospholipid biosynthetic process  positive regulation of sequestering of triglyceride  lipid storage  integral component of endoplasmic reticulum membrane  lipid particle organization  lipid particle organization  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum membrane  endoplasmic reticulum membrane  phospholipid biosynthetic process  positive regulation of sequestering of triglyceride  lipid storage  integral component of endoplasmic reticulum membrane  lipid particle organization  lipid particle organization  
NDEx NetworkFITM1
Atlas of Cancer Signalling NetworkFITM1
Wikipedia pathwaysFITM1
Orthology - Evolution
OrthoDB161247
GeneTree (enSembl)ENSG00000139914
Phylogenetic Trees/Animal Genes : TreeFamFITM1
HOVERGENA5D6W6
HOGENOMA5D6W6
Homologs : HomoloGeneFITM1
Homology/Alignments : Family Browser (UCSC)FITM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFITM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FITM1
dbVarFITM1
ClinVarFITM1
1000_GenomesFITM1 
Exome Variant ServerFITM1
ExAC (Exome Aggregation Consortium)FITM1 (select the gene name)
Genetic variants : HAPMAP161247
Genomic Variants (DGV)FITM1 [DGVbeta]
DECIPHERFITM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFITM1 
Mutations
ICGC Data PortalFITM1 
TCGA Data PortalFITM1 
Broad Tumor PortalFITM1
OASIS PortalFITM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFITM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFITM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FITM1
DgiDB (Drug Gene Interaction Database)FITM1
DoCM (Curated mutations)FITM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FITM1 (select a term)
intoGenFITM1
Cancer3DFITM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612028   
Orphanet
MedgenFITM1
Genetic Testing Registry FITM1
NextProtA5D6W6 [Medical]
TSGene161247
GENETestsFITM1
Target ValidationFITM1
Huge Navigator FITM1 [HugePedia]
snp3D : Map Gene to Disease161247
BioCentury BCIQFITM1
ClinGenFITM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161247
Chemical/Pharm GKB GenePA165478932
Clinical trialFITM1
Miscellaneous
canSAR (ICR)FITM1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFITM1
EVEXFITM1
GoPubMedFITM1
iHOPFITM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:08:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.