Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FITM2 (fat storage inducing transmembrane protein 2)

Identity

Alias_namesC20orf142
chromosome 20 open reading frame 142
Alias_symbol (synonym)dJ881L22.2
FIT2
Other aliasFit2
HGNC (Hugo) FITM2
LocusID (NCBI) 128486
Atlas_Id 63389
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44302838 and ends at 44311252 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FITM2 (20q13.12) / YTHDC1 (4q13.2)STIM1 (11p15.4) / FITM2 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FITM2   16135
Cards
Entrez_Gene (NCBI)FITM2  128486  fat storage inducing transmembrane protein 2
AliasesC20orf142; Fit2; dJ881L22.2
GeneCards (Weizmann)FITM2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:44302838-44311252 [Contig_View]  FITM2 [Vega]
TCGA cBioPortalFITM2
AceView (NCBI)FITM2
Genatlas (Paris)FITM2
WikiGenes128486
SOURCE (Princeton)FITM2
Genetics Home Reference (NIH)FITM2
Genomic and cartography
GoldenPath hg38 (UCSC)FITM2  -     chr20:44302838-44311252 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FITM2  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblFITM2 - 20q13.12 [CytoView hg19]  FITM2 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIFITM2 [Mapview hg19]  FITM2 [Mapview hg38]
OMIM612029   
Gene and transcription
Genbank (Entrez)BC029662 BC130446 BC136640
RefSeq transcript (Entrez)NM_001080472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FITM2
Cluster EST : UnigeneHs.632269 [ NCBI ]
CGAP (NCI)Hs.632269
Gene ExpressionFITM2 [ NCBI-GEO ]   FITM2 [ EBI - ARRAY_EXPRESS ]   FITM2 [ SEEK ]   FITM2 [ MEM ]
Gene Expression Viewer (FireBrowse)FITM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128486
GTEX Portal (Tissue expression)FITM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6M3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6M3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6M3
Splice isoforms : SwissVarQ8N6M3
PhosPhoSitePlusQ8N6M3
Domains : Interpro (EBI)FIT   
Domain families : Pfam (Sanger)Scs3p (PF10261)   
Domain families : Pfam (NCBI)pfam10261   
Conserved Domain (NCBI)FITM2
DMDM Disease mutations128486
Blocks (Seattle)FITM2
SuperfamilyQ8N6M3
Peptide AtlasQ8N6M3
IPIIPI00374076   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6M3
IntAct (EBI)Q8N6M3
BioGRIDFITM2
STRING (EMBL)FITM2
ZODIACFITM2
Ontologies - Pathways
QuickGOQ8N6M3
Ontology : AmiGOmolecular_function  mitochondrion  endoplasmic reticulum membrane  endoplasmic reticulum membrane  cytoskeleton organization  phospholipid biosynthetic process  regulation of triglyceride biosynthetic process  positive regulation of sequestering of triglyceride  lipid storage  regulation of cell morphogenesis  integral component of endoplasmic reticulum membrane  integral component of endoplasmic reticulum membrane  sequestering of triglyceride  lipid particle organization  lipid particle organization  cellular triglyceride homeostasis  
Ontology : EGO-EBImolecular_function  mitochondrion  endoplasmic reticulum membrane  endoplasmic reticulum membrane  cytoskeleton organization  phospholipid biosynthetic process  regulation of triglyceride biosynthetic process  positive regulation of sequestering of triglyceride  lipid storage  regulation of cell morphogenesis  integral component of endoplasmic reticulum membrane  integral component of endoplasmic reticulum membrane  sequestering of triglyceride  lipid particle organization  lipid particle organization  cellular triglyceride homeostasis  
NDEx NetworkFITM2
Atlas of Cancer Signalling NetworkFITM2
Wikipedia pathwaysFITM2
Orthology - Evolution
OrthoDB128486
Phylogenetic Trees/Animal Genes : TreeFamFITM2
HOVERGENQ8N6M3
HOGENOMQ8N6M3
Homologs : HomoloGeneFITM2
Homology/Alignments : Family Browser (UCSC)FITM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFITM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FITM2
dbVarFITM2
ClinVarFITM2
1000_GenomesFITM2 
Exome Variant ServerFITM2
ExAC (Exome Aggregation Consortium)FITM2 (select the gene name)
Genetic variants : HAPMAP128486
Genomic Variants (DGV)FITM2 [DGVbeta]
DECIPHERFITM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFITM2 
Mutations
ICGC Data PortalFITM2 
TCGA Data PortalFITM2 
Broad Tumor PortalFITM2
OASIS PortalFITM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFITM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFITM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FITM2
DgiDB (Drug Gene Interaction Database)FITM2
DoCM (Curated mutations)FITM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FITM2 (select a term)
intoGenFITM2
Cancer3DFITM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612029   
Orphanet
MedgenFITM2
Genetic Testing Registry FITM2
NextProtQ8N6M3 [Medical]
TSGene128486
GENETestsFITM2
Target ValidationFITM2
Huge Navigator FITM2 [HugePedia]
snp3D : Map Gene to Disease128486
BioCentury BCIQFITM2
ClinGenFITM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128486
Chemical/Pharm GKB GenePA25685
Clinical trialFITM2
Miscellaneous
canSAR (ICR)FITM2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFITM2
EVEXFITM2
GoPubMedFITM2
iHOPFITM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:49:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.