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FITM2 (fat storage inducing transmembrane protein 2)

Identity

Alias (NCBI)C20orf142
Fit2
SIDDIS
dJ881L22.2
HGNC (Hugo) FITM2
HGNC Alias symbdJ881L22.2
FIT2
HGNC Alias namefat inducing transcript 2
HGNC Previous nameC20orf142
HGNC Previous namechromosome 20 open reading frame 142
LocusID (NCBI) 128486
Atlas_Id 63389
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44302840 and ends at 44311202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FITM2 (20q13.12) / YTHDC1 (4q13.2)STIM1 (11p15.4) / FITM2 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FITM2   16135
Cards
Entrez_Gene (NCBI)FITM2    fat storage inducing transmembrane protein 2
AliasesC20orf142; Fit2; SIDDIS; dJ881L22.2
GeneCards (Weizmann)FITM2
Ensembl hg19 (Hinxton)ENSG00000197296 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197296 [Gene_View]  ENSG00000197296 [Sequence]  chr20:44302840-44311202 [Contig_View]  FITM2 [Vega]
ICGC DataPortalENSG00000197296
TCGA cBioPortalFITM2
AceView (NCBI)FITM2
Genatlas (Paris)FITM2
SOURCE (Princeton)FITM2
Genetics Home Reference (NIH)FITM2
Genomic and cartography
GoldenPath hg38 (UCSC)FITM2  -     chr20:44302840-44311202 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FITM2  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathFITM2 - 20q13.12 [CytoView hg19]  FITM2 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000197296
Genome Data Viewer NCBIFITM2 [Mapview hg19]  
OMIM612029   618635   
Gene and transcription
Genbank (Entrez)BC029662 BC130446 BC136640
RefSeq transcript (Entrez)NM_001080472
Consensus coding sequences : CCDS (NCBI)FITM2
Gene ExpressionFITM2 [ NCBI-GEO ]   FITM2 [ EBI - ARRAY_EXPRESS ]   FITM2 [ SEEK ]   FITM2 [ MEM ]
Gene Expression Viewer (FireBrowse)FITM2 [ Firebrowse - Broad ]
GenevisibleExpression of FITM2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128486
GTEX Portal (Tissue expression)FITM2
Human Protein AtlasENSG00000197296-FITM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6M3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6M3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6M3
PhosPhoSitePlusQ8N6M3
Domains : Interpro (EBI)FIT   
Domain families : Pfam (Sanger)Scs3p (PF10261)   
Domain families : Pfam (NCBI)pfam10261   
Conserved Domain (NCBI)FITM2
SuperfamilyQ8N6M3
AlphaFold pdb e-kbQ8N6M3   
Human Protein Atlas [tissue]ENSG00000197296-FITM2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8N6M3
IntAct (EBI)Q8N6M3
BioGRIDFITM2
STRING (EMBL)FITM2
ZODIACFITM2
Ontologies - Pathways
QuickGOQ8N6M3
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  cytoskeleton organization  phospholipid biosynthetic process  regulation of triglyceride biosynthetic process  positive regulation of sequestering of triglyceride  CoA pyrophosphatase activity  triglyceride binding  lipid storage  diacylglycerol binding  regulation of cell morphogenesis  integral component of endoplasmic reticulum membrane  integral component of endoplasmic reticulum membrane  sequestering of triglyceride  lipid droplet organization  lipid droplet organization  lipid droplet organization  cellular triglyceride homeostasis  fatty-acyl-CoA catabolic process  lipid homeostasis  lipid droplet formation  lipid droplet formation  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  cytoskeleton organization  phospholipid biosynthetic process  regulation of triglyceride biosynthetic process  positive regulation of sequestering of triglyceride  CoA pyrophosphatase activity  triglyceride binding  lipid storage  diacylglycerol binding  regulation of cell morphogenesis  integral component of endoplasmic reticulum membrane  integral component of endoplasmic reticulum membrane  sequestering of triglyceride  lipid droplet organization  lipid droplet organization  lipid droplet organization  cellular triglyceride homeostasis  fatty-acyl-CoA catabolic process  lipid homeostasis  lipid droplet formation  lipid droplet formation  
NDEx NetworkFITM2
Atlas of Cancer Signalling NetworkFITM2
Wikipedia pathwaysFITM2
Orthology - Evolution
OrthoDB128486
GeneTree (enSembl)ENSG00000197296
Phylogenetic Trees/Animal Genes : TreeFamFITM2
Homologs : HomoloGeneFITM2
Homology/Alignments : Family Browser (UCSC)FITM2
Gene fusions - Rearrangements
Fusion : QuiverFITM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFITM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FITM2
dbVarFITM2
ClinVarFITM2
MonarchFITM2
1000_GenomesFITM2 
Exome Variant ServerFITM2
GNOMAD BrowserENSG00000197296
Varsome BrowserFITM2
ACMGFITM2 variants
VarityQ8N6M3
Genomic Variants (DGV)FITM2 [DGVbeta]
DECIPHERFITM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFITM2 
Mutations
ICGC Data PortalFITM2 
TCGA Data PortalFITM2 
Broad Tumor PortalFITM2
OASIS PortalFITM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFITM2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFITM2
Mutations and Diseases : HGMDFITM2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFITM2
DgiDB (Drug Gene Interaction Database)FITM2
DoCM (Curated mutations)FITM2
CIViC (Clinical Interpretations of Variants in Cancer)FITM2
Cancer3DFITM2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612029    618635   
Orphanet
DisGeNETFITM2
MedgenFITM2
Genetic Testing Registry FITM2
NextProtQ8N6M3 [Medical]
GENETestsFITM2
Target ValidationFITM2
Huge Navigator FITM2 [HugePedia]
ClinGenFITM2
Clinical trials, drugs, therapy
MyCancerGenomeFITM2
Protein Interactions : CTDFITM2
Pharm GKB GenePA25685
PharosQ8N6M3
Clinical trialFITM2
Miscellaneous
canSAR (ICR)FITM2
HarmonizomeFITM2
DataMed IndexFITM2
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFITM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:50:34 CEST 2021

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