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FJX1 (four jointed box 1)

Identity

Alias_namesfour jointed box 1 (Drosophila)
Alias_symbol (synonym)FLJ22416
FLJ25593
Other alias-
HGNC (Hugo) FJX1
LocusID (NCBI) 24147
Atlas_Id 63391
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 35618187 and ends at 35620873 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FJX1 (11p13) / WTIP (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FJX1   17166
Cards
Entrez_Gene (NCBI)FJX1  24147  four jointed box 1
Aliases
GeneCards (Weizmann)FJX1
Ensembl hg19 (Hinxton)ENSG00000179431 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179431 [Gene_View]  chr11:35618187-35620873 [Contig_View]  FJX1 [Vega]
ICGC DataPortalENSG00000179431
TCGA cBioPortalFJX1
AceView (NCBI)FJX1
Genatlas (Paris)FJX1
WikiGenes24147
SOURCE (Princeton)FJX1
Genetics Home Reference (NIH)FJX1
Genomic and cartography
GoldenPath hg38 (UCSC)FJX1  -     chr11:35618187-35620873 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FJX1  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblFJX1 - 11p13 [CytoView hg19]  FJX1 - 11p13 [CytoView hg38]
Mapping of homologs : NCBIFJX1 [Mapview hg19]  FJX1 [Mapview hg38]
OMIM612206   
Gene and transcription
Genbank (Entrez)AJ245599 AK026069 AK098459 AK315015 BC049171
RefSeq transcript (Entrez)NM_014344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FJX1
Cluster EST : UnigeneHs.39384 [ NCBI ]
CGAP (NCI)Hs.39384
Alternative Splicing GalleryENSG00000179431
Gene ExpressionFJX1 [ NCBI-GEO ]   FJX1 [ EBI - ARRAY_EXPRESS ]   FJX1 [ SEEK ]   FJX1 [ MEM ]
Gene Expression Viewer (FireBrowse)FJX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24147
GTEX Portal (Tissue expression)FJX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VR8
Splice isoforms : SwissVarQ86VR8
PhosPhoSitePlusQ86VR8
Domains : Interpro (EBI)FJX1/FJ   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FJX1
DMDM Disease mutations24147
Blocks (Seattle)FJX1
SuperfamilyQ86VR8
Human Protein AtlasENSG00000179431
Peptide AtlasQ86VR8
HPRD16897
IPIIPI00003834   
Protein Interaction databases
DIP (DOE-UCLA)Q86VR8
IntAct (EBI)Q86VR8
FunCoupENSG00000179431
BioGRIDFJX1
STRING (EMBL)FJX1
ZODIACFJX1
Ontologies - Pathways
QuickGOQ86VR8
Ontology : AmiGOextracellular space  cell-cell signaling  retina layer formation  
Ontology : EGO-EBIextracellular space  cell-cell signaling  retina layer formation  
NDEx NetworkFJX1
Atlas of Cancer Signalling NetworkFJX1
Wikipedia pathwaysFJX1
Orthology - Evolution
OrthoDB24147
GeneTree (enSembl)ENSG00000179431
Phylogenetic Trees/Animal Genes : TreeFamFJX1
HOVERGENQ86VR8
HOGENOMQ86VR8
Homologs : HomoloGeneFJX1
Homology/Alignments : Family Browser (UCSC)FJX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFJX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FJX1
dbVarFJX1
ClinVarFJX1
1000_GenomesFJX1 
Exome Variant ServerFJX1
ExAC (Exome Aggregation Consortium)FJX1 (select the gene name)
Genetic variants : HAPMAP24147
Genomic Variants (DGV)FJX1 [DGVbeta]
DECIPHERFJX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFJX1 
Mutations
ICGC Data PortalFJX1 
TCGA Data PortalFJX1 
Broad Tumor PortalFJX1
OASIS PortalFJX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFJX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFJX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FJX1
DgiDB (Drug Gene Interaction Database)FJX1
DoCM (Curated mutations)FJX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FJX1 (select a term)
intoGenFJX1
Cancer3DFJX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612206   
Orphanet
MedgenFJX1
Genetic Testing Registry FJX1
NextProtQ86VR8 [Medical]
TSGene24147
GENETestsFJX1
Target ValidationFJX1
Huge Navigator FJX1 [HugePedia]
snp3D : Map Gene to Disease24147
BioCentury BCIQFJX1
ClinGenFJX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD24147
Chemical/Pharm GKB GenePA28151
Clinical trialFJX1
Miscellaneous
canSAR (ICR)FJX1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFJX1
EVEXFJX1
GoPubMedFJX1
iHOPFJX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:31 CEST 2017

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