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FKBP11 (FK506 binding protein 11)

Identity

Alias_namesFK506 binding protein 11 (19 kDa)
FK506 binding protein 11, 19 kDa
Alias_symbol (synonym)FKBP19
Other alias
HGNC (Hugo) FKBP11
LocusID (NCBI) 51303
Atlas_Id 53503
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 48921959 and ends at 48924881 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPN13 (2p23.1) / FKBP11 (12q13.12)FKBP11 (12q13.12) / UBE2V1 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FKBP11   18624
Cards
Entrez_Gene (NCBI)FKBP11  51303  FK506 binding protein 11
AliasesFKBP19
GeneCards (Weizmann)FKBP11
Ensembl hg19 (Hinxton)ENSG00000134285 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134285 [Gene_View]  chr12:48921959-48924881 [Contig_View]  FKBP11 [Vega]
ICGC DataPortalENSG00000134285
TCGA cBioPortalFKBP11
AceView (NCBI)FKBP11
Genatlas (Paris)FKBP11
WikiGenes51303
SOURCE (Princeton)FKBP11
Genetics Home Reference (NIH)FKBP11
Genomic and cartography
GoldenPath hg38 (UCSC)FKBP11  -     chr12:48921959-48924881 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FKBP11  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblFKBP11 - 12q13.12 [CytoView hg19]  FKBP11 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBIFKBP11 [Mapview hg19]  FKBP11 [Mapview hg38]
OMIM610571   
Gene and transcription
Genbank (Entrez)AF238079 AK094876 AK301455 AY358998 BC027973
RefSeq transcript (Entrez)NM_001143781 NM_001143782 NM_016594
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FKBP11
Cluster EST : UnigeneHs.655103 [ NCBI ]
CGAP (NCI)Hs.655103
Alternative Splicing GalleryENSG00000134285
Gene ExpressionFKBP11 [ NCBI-GEO ]   FKBP11 [ EBI - ARRAY_EXPRESS ]   FKBP11 [ SEEK ]   FKBP11 [ MEM ]
Gene Expression Viewer (FireBrowse)FKBP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51303
GTEX Portal (Tissue expression)FKBP11
Human Protein AtlasENSG00000134285-FKBP11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYL4
Splice isoforms : SwissVarQ9NYL4
Catalytic activity : Enzyme5.2.1.8 [ Enzyme-Expasy ]   5.2.1.85.2.1.8 [ IntEnz-EBI ]   5.2.1.8 [ BRENDA ]   5.2.1.8 [ KEGG ]   
PhosPhoSitePlusQ9NYL4
Domaine pattern : Prosite (Expaxy)FKBP_PPIASE (PS50059)   
Domains : Interpro (EBI)PPIase_FKBP    PPIase_FKBP_dom   
Domain families : Pfam (Sanger)FKBP_C (PF00254)   
Domain families : Pfam (NCBI)pfam00254   
Conserved Domain (NCBI)FKBP11
DMDM Disease mutations51303
Blocks (Seattle)FKBP11
SuperfamilyQ9NYL4
Human Protein Atlas [tissue]ENSG00000134285-FKBP11 [tissue]
Peptide AtlasQ9NYL4
HPRD11170
IPIIPI00009885   IPI01020854   IPI01022828   IPI01021400   IPI01021239   IPI00793669   IPI00789642   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYL4
IntAct (EBI)Q9NYL4
FunCoupENSG00000134285
BioGRIDFKBP11
STRING (EMBL)FKBP11
ZODIACFKBP11
Ontologies - Pathways
QuickGOQ9NYL4
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  FK506 binding  cytoplasm  membrane  integral component of membrane  chaperone-mediated protein folding  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  FK506 binding  cytoplasm  membrane  integral component of membrane  chaperone-mediated protein folding  
NDEx NetworkFKBP11
Atlas of Cancer Signalling NetworkFKBP11
Wikipedia pathwaysFKBP11
Orthology - Evolution
OrthoDB51303
GeneTree (enSembl)ENSG00000134285
Phylogenetic Trees/Animal Genes : TreeFamFKBP11
HOVERGENQ9NYL4
HOGENOMQ9NYL4
Homologs : HomoloGeneFKBP11
Homology/Alignments : Family Browser (UCSC)FKBP11
Gene fusions - Rearrangements
Fusion: Tumor Portal FKBP11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFKBP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FKBP11
dbVarFKBP11
ClinVarFKBP11
1000_GenomesFKBP11 
Exome Variant ServerFKBP11
ExAC (Exome Aggregation Consortium)ENSG00000134285
GNOMAD BrowserENSG00000134285
Genetic variants : HAPMAP51303
Genomic Variants (DGV)FKBP11 [DGVbeta]
DECIPHERFKBP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFKBP11 
Mutations
ICGC Data PortalFKBP11 
TCGA Data PortalFKBP11 
Broad Tumor PortalFKBP11
OASIS PortalFKBP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFKBP11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFKBP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FKBP11
DgiDB (Drug Gene Interaction Database)FKBP11
DoCM (Curated mutations)FKBP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FKBP11 (select a term)
intoGenFKBP11
Cancer3DFKBP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610571   
Orphanet
MedgenFKBP11
Genetic Testing Registry FKBP11
NextProtQ9NYL4 [Medical]
TSGene51303
GENETestsFKBP11
Target ValidationFKBP11
Huge Navigator FKBP11 [HugePedia]
snp3D : Map Gene to Disease51303
BioCentury BCIQFKBP11
ClinGenFKBP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51303
Chemical/Pharm GKB GenePA38607
Clinical trialFKBP11
Miscellaneous
canSAR (ICR)FKBP11 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFKBP11
EVEXFKBP11
GoPubMedFKBP11
iHOPFKBP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:50:09 CET 2017

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