Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FKBP2 (FKBP prolyl isomerase 2)

Identity

Alias (NCBI)FKBP-13
FKBP13
PPIase
HGNC (Hugo) FKBP2
HGNC Alias symbFKBP-13
PPIase
HGNC Alias nameFK506 binding protein 2 (13kD)
 peptidyl-prolyl cis-trans isomerase
 rapamycin-binding protein
 proline isomerase
HGNC Previous nameFK506-binding protein 2 (13kD)
 FK506 binding protein 2, 13kDa
LocusID (NCBI) 2286
Atlas_Id 63397
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64242116 and ends at 64244135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DPP3 (11q13.2) / FKBP2 (11q13.1)FKBP2 (11q13.1) / PLEC (8q24.3)FKBP2 (11q13.1) / TRIM8 (10q24.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  DPP3/FKBP2 (11q13)

External links

Nomenclature
HGNC (Hugo)FKBP2   3718
Cards
Entrez_Gene (NCBI)FKBP2    FKBP prolyl isomerase 2
AliasesFKBP-13; FKBP13; PPIase
GeneCards (Weizmann)FKBP2
Ensembl hg19 (Hinxton)ENSG00000173486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173486 [Gene_View]  ENSG00000173486 [Sequence]  chr11:64242116-64244135 [Contig_View]  FKBP2 [Vega]
ICGC DataPortalENSG00000173486
TCGA cBioPortalFKBP2
AceView (NCBI)FKBP2
Genatlas (Paris)FKBP2
SOURCE (Princeton)FKBP2
Genetics Home Reference (NIH)FKBP2
Genomic and cartography
GoldenPath hg38 (UCSC)FKBP2  -     chr11:64242116-64244135 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FKBP2  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathFKBP2 - 11q13.1 [CytoView hg19]  FKBP2 - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000173486
genome Data Viewer NCBIFKBP2 [Mapview hg19]  
OMIM186946   
Gene and transcription
Genbank (Entrez)AW450265 BC003384 BC091475 BT009861 BU682774
RefSeq transcript (Entrez)NM_001135208 NM_001370360 NM_001370362 NM_001370363 NM_001370365 NM_001370367 NM_004470 NM_057092
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FKBP2
Alternative Splicing GalleryENSG00000173486
Gene ExpressionFKBP2 [ NCBI-GEO ]   FKBP2 [ EBI - ARRAY_EXPRESS ]   FKBP2 [ SEEK ]   FKBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)FKBP2 [ Firebrowse - Broad ]
GenevisibleExpression of FKBP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2286
GTEX Portal (Tissue expression)FKBP2
Human Protein AtlasENSG00000173486-FKBP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP26885   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP26885  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP26885
Splice isoforms : SwissVarP26885
Catalytic activity : Enzyme5.2.1.8 [ Enzyme-Expasy ]   5.2.1.85.2.1.8 [ IntEnz-EBI ]   5.2.1.8 [ BRENDA ]   5.2.1.8 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusP26885
Domaine pattern : Prosite (Expaxy)FKBP_PPIASE (PS50059)   
Domains : Interpro (EBI)PPIase_FKBP_dom   
Domain families : Pfam (Sanger)FKBP_C (PF00254)   
Domain families : Pfam (NCBI)pfam00254   
Conserved Domain (NCBI)FKBP2
Blocks (Seattle)FKBP2
PDB (RSDB)2PBC    4NNR   
PDB Europe2PBC    4NNR   
PDB (PDBSum)2PBC    4NNR   
PDB (IMB)2PBC    4NNR   
Structural Biology KnowledgeBase2PBC    4NNR   
SCOP (Structural Classification of Proteins)2PBC    4NNR   
CATH (Classification of proteins structures)2PBC    4NNR   
SuperfamilyP26885
Human Protein Atlas [tissue]ENSG00000173486-FKBP2 [tissue]
Peptide AtlasP26885
HPRD01742
IPIIPI00002535   IPI01013732   
Protein Interaction databases
DIP (DOE-UCLA)P26885
IntAct (EBI)P26885
BioGRIDFKBP2
STRING (EMBL)FKBP2
ZODIACFKBP2
Ontologies - Pathways
QuickGOP26885
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  protein binding  FK506 binding  endoplasmic reticulum  endoplasmic reticulum membrane  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  protein binding  FK506 binding  endoplasmic reticulum  endoplasmic reticulum membrane  
NDEx NetworkFKBP2
Atlas of Cancer Signalling NetworkFKBP2
Wikipedia pathwaysFKBP2
Orthology - Evolution
OrthoDB2286
GeneTree (enSembl)ENSG00000173486
Phylogenetic Trees/Animal Genes : TreeFamFKBP2
HOGENOMP26885
Homologs : HomoloGeneFKBP2
Homology/Alignments : Family Browser (UCSC)FKBP2
Gene fusions - Rearrangements
Fusion : QuiverFKBP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFKBP2 [hg38]
dbVarFKBP2
ClinVarFKBP2
MonarchFKBP2
1000_GenomesFKBP2 
Exome Variant ServerFKBP2
GNOMAD BrowserENSG00000173486
Varsome BrowserFKBP2
Genomic Variants (DGV)FKBP2 [DGVbeta]
DECIPHERFKBP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFKBP2 
Mutations
ICGC Data PortalFKBP2 
TCGA Data PortalFKBP2 
Broad Tumor PortalFKBP2
OASIS PortalFKBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFKBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFKBP2
Mutations and Diseases : HGMDFKBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FKBP2
DgiDB (Drug Gene Interaction Database)FKBP2
DoCM (Curated mutations)FKBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FKBP2 (select a term)
intoGenFKBP2
Cancer3DFKBP2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186946   
Orphanet
DisGeNETFKBP2
MedgenFKBP2
Genetic Testing Registry FKBP2
NextProtP26885 [Medical]
GENETestsFKBP2
Target ValidationFKBP2
Huge Navigator FKBP2 [HugePedia]
ClinGenFKBP2
Clinical trials, drugs, therapy
MyCancerGenomeFKBP2
Protein Interactions : CTD
Pharm GKB GenePA28159
Clinical trialFKBP2
Miscellaneous
canSAR (ICR)FKBP2 (select the gene name)
HarmonizomeFKBP2
DataMed IndexFKBP2
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFKBP2
EVEXFKBP2
GoPubMedFKBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:54:40 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.