Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FKBP7 (FKBP prolyl isomerase 7)

Identity

Alias (NCBI)FKBP23
PPIase
HGNC (Hugo) FKBP7
HGNC Alias symbFKBP23
HGNC Previous nameFK506-binding protein 7
LocusID (NCBI) 51661
Atlas_Id 63400
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 178463664 and ends at 178478628 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF385B (2q31.2) / FKBP7 (2q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  ZNF385B/FKBP7 (2q31)

External links

Nomenclature
HGNC (Hugo)FKBP7   3723
Cards
Entrez_Gene (NCBI)FKBP7    FKBP prolyl isomerase 7
AliasesFKBP23; PPIase
GeneCards (Weizmann)FKBP7
Ensembl hg19 (Hinxton)ENSG00000079150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079150 [Gene_View]  ENSG00000079150 [Sequence]  chr2:178463664-178478628 [Contig_View]  FKBP7 [Vega]
ICGC DataPortalENSG00000079150
TCGA cBioPortalFKBP7
AceView (NCBI)FKBP7
Genatlas (Paris)FKBP7
SOURCE (Princeton)FKBP7
Genetics Home Reference (NIH)FKBP7
Genomic and cartography
GoldenPath hg38 (UCSC)FKBP7  -     chr2:178463664-178478628 -  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FKBP7  -     2q31.2   [Description]    (hg19-Feb_2009)
GoldenPathFKBP7 - 2q31.2 [CytoView hg19]  FKBP7 - 2q31.2 [CytoView hg38]
ImmunoBaseENSG00000079150
genome Data Viewer NCBIFKBP7 [Mapview hg19]  
OMIM607062   
Gene and transcription
Genbank (Entrez)AA447628 AF092137 AF100751 AK292145 AK299215
RefSeq transcript (Entrez)NM_001135212 NM_016105 NM_181342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FKBP7
Alternative Splicing GalleryENSG00000079150
Gene ExpressionFKBP7 [ NCBI-GEO ]   FKBP7 [ EBI - ARRAY_EXPRESS ]   FKBP7 [ SEEK ]   FKBP7 [ MEM ]
Gene Expression Viewer (FireBrowse)FKBP7 [ Firebrowse - Broad ]
GenevisibleExpression of FKBP7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51661
GTEX Portal (Tissue expression)FKBP7
Human Protein AtlasENSG00000079150-FKBP7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y680   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y680  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y680
Splice isoforms : SwissVarQ9Y680
Catalytic activity : Enzyme5.2.1.8 [ Enzyme-Expasy ]   5.2.1.85.2.1.8 [ IntEnz-EBI ]   5.2.1.8 [ BRENDA ]   5.2.1.8 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9Y680
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    ER_TARGET (PS00014)    FKBP_PPIASE (PS50059)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    PPIase_FKBP_dom   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)    FKBP_C (PF00254)   
Domain families : Pfam (NCBI)pfam13202    pfam00254   
Conserved Domain (NCBI)FKBP7
Blocks (Seattle)FKBP7
SuperfamilyQ9Y680
Human Protein Atlas [tissue]ENSG00000079150-FKBP7 [tissue]
Peptide AtlasQ9Y680
HPRD08451
IPIIPI00001914   IPI00218686   IPI01009357   IPI00942796   IPI00917595   IPI01025683   IPI00917854   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y680
IntAct (EBI)Q9Y680
BioGRIDFKBP7
STRING (EMBL)FKBP7
ZODIACFKBP7
Ontologies - Pathways
QuickGOQ9Y680
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  calcium ion binding  protein binding  endoplasmic reticulum lumen  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  calcium ion binding  protein binding  endoplasmic reticulum lumen  
NDEx NetworkFKBP7
Atlas of Cancer Signalling NetworkFKBP7
Wikipedia pathwaysFKBP7
Orthology - Evolution
OrthoDB51661
GeneTree (enSembl)ENSG00000079150
Phylogenetic Trees/Animal Genes : TreeFamFKBP7
HOGENOMQ9Y680
Homologs : HomoloGeneFKBP7
Homology/Alignments : Family Browser (UCSC)FKBP7
Gene fusions - Rearrangements
Fusion : QuiverFKBP7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFKBP7 [hg38]
dbVarFKBP7
ClinVarFKBP7
MonarchFKBP7
1000_GenomesFKBP7 
Exome Variant ServerFKBP7
GNOMAD BrowserENSG00000079150
Varsome BrowserFKBP7
Genomic Variants (DGV)FKBP7 [DGVbeta]
DECIPHERFKBP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFKBP7 
Mutations
ICGC Data PortalFKBP7 
TCGA Data PortalFKBP7 
Broad Tumor PortalFKBP7
OASIS PortalFKBP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFKBP7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFKBP7
Mutations and Diseases : HGMDFKBP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FKBP7
DgiDB (Drug Gene Interaction Database)FKBP7
DoCM (Curated mutations)FKBP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FKBP7 (select a term)
intoGenFKBP7
Cancer3DFKBP7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607062   
Orphanet
DisGeNETFKBP7
MedgenFKBP7
Genetic Testing Registry FKBP7
NextProtQ9Y680 [Medical]
GENETestsFKBP7
Target ValidationFKBP7
Huge Navigator FKBP7 [HugePedia]
ClinGenFKBP7
Clinical trials, drugs, therapy
MyCancerGenomeFKBP7
Protein Interactions : CTD
Pharm GKB GenePA28164
Clinical trialFKBP7
Miscellaneous
canSAR (ICR)FKBP7 (select the gene name)
HarmonizomeFKBP7
DataMed IndexFKBP7
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFKBP7
EVEXFKBP7
GoPubMedFKBP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:54:40 CET 2020
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