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FLJ42102 (uncharacterized LOC399923)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 399923
Atlas_Id 63497
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71405746 and ends at 71423354 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)FLJ42102  399923  uncharacterized LOC399923
Aliases
GeneCards (Weizmann)FLJ42102
Ensembl hg19 (Hinxton)ENSG00000172900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172900 [Gene_View]  chr11:71405746-71423354 [Contig_View]  FLJ42102 [Vega]
ICGC DataPortalENSG00000172900
TCGA cBioPortalFLJ42102
AceView (NCBI)FLJ42102
Genatlas (Paris)FLJ42102
WikiGenes399923
SOURCE (Princeton)FLJ42102
Genetics Home Reference (NIH)FLJ42102
Genomic and cartography
GoldenPath hg38 (UCSC)FLJ42102  -     chr11:71405746-71423354 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FLJ42102  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblFLJ42102 - 11q13.4 [CytoView hg19]  FLJ42102 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIFLJ42102 [Mapview hg19]  FLJ42102 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124096
RefSeq transcript (Entrez)NM_001001680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FLJ42102
Cluster EST : UnigeneHs.128191 [ NCBI ]
CGAP (NCI)Hs.128191
Alternative Splicing GalleryENSG00000172900
Gene ExpressionFLJ42102 [ NCBI-GEO ]   FLJ42102 [ EBI - ARRAY_EXPRESS ]   FLJ42102 [ SEEK ]   FLJ42102 [ MEM ]
Gene Expression Viewer (FireBrowse)FLJ42102 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399923
GTEX Portal (Tissue expression)FLJ42102
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVU0
Splice isoforms : SwissVarQ6ZVU0
PhosPhoSitePlusQ6ZVU0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FLJ42102
DMDM Disease mutations399923
Blocks (Seattle)FLJ42102
SuperfamilyQ6ZVU0
Human Protein AtlasENSG00000172900
Peptide AtlasQ6ZVU0
HPRD13457
IPIIPI00419158   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVU0
IntAct (EBI)Q6ZVU0
FunCoupENSG00000172900
BioGRIDFLJ42102
STRING (EMBL)FLJ42102
ZODIACFLJ42102
Ontologies - Pathways
QuickGOQ6ZVU0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFLJ42102
Atlas of Cancer Signalling NetworkFLJ42102
Wikipedia pathwaysFLJ42102
Orthology - Evolution
OrthoDB399923
GeneTree (enSembl)ENSG00000172900
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZVU0
HOGENOMQ6ZVU0
Homologs : HomoloGeneFLJ42102
Homology/Alignments : Family Browser (UCSC)FLJ42102
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFLJ42102 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FLJ42102
dbVarFLJ42102
ClinVarFLJ42102
1000_GenomesFLJ42102 
Exome Variant ServerFLJ42102
ExAC (Exome Aggregation Consortium)FLJ42102 (select the gene name)
Genetic variants : HAPMAP399923
Genomic Variants (DGV)FLJ42102 [DGVbeta]
DECIPHERFLJ42102 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFLJ42102 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch FLJ42102
DgiDB (Drug Gene Interaction Database)FLJ42102
DoCM (Curated mutations)FLJ42102 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FLJ42102 (select a term)
intoGenFLJ42102
Cancer3DFLJ42102(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFLJ42102
Genetic Testing Registry FLJ42102
NextProtQ6ZVU0 [Medical]
TSGene399923
GENETestsFLJ42102
Target ValidationFLJ42102
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease399923
BioCentury BCIQFLJ42102
ClinGenFLJ42102
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399923
Clinical trialFLJ42102
Miscellaneous
canSAR (ICR)FLJ42102 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLJ42102
EVEXFLJ42102
GoPubMedFLJ42102
iHOPFLJ42102
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:49:33 CEST 2017

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