Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FLJ42393 (uncharacterized LOC401105)

Identity

Other aliasAVPC1948
HGNC (Hugo) -
LocusID (NCBI) 401105
Atlas_Id 63502
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 188178543 and ends at 188180810 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)FLJ42393  401105  uncharacterized LOC401105
AliasesAVPC1948
GeneCards (Weizmann)FLJ42393
Ensembl hg19 (Hinxton)ENSG00000279891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279891 [Gene_View]  chr3:188178543-188180810 [Contig_View]  FLJ42393 [Vega]
ICGC DataPortalENSG00000279891
TCGA cBioPortalFLJ42393
AceView (NCBI)FLJ42393
Genatlas (Paris)FLJ42393
WikiGenes401105
SOURCE (Princeton)FLJ42393
Genetics Home Reference (NIH)FLJ42393
Genomic and cartography
GoldenPath hg38 (UCSC)FLJ42393  -     chr3:188178543-188180810 +  3q27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FLJ42393  -     3q27.3   [Description]    (hg19-Feb_2009)
EnsemblFLJ42393 - 3q27.3 [CytoView hg19]  FLJ42393 - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBIFLJ42393 [Mapview hg19]  FLJ42393 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124384 AY358227 BC132980 BC132982
RefSeq transcript (Entrez)NM_207488
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FLJ42393
Cluster EST : UnigeneHs.679026 [ NCBI ]
CGAP (NCI)Hs.679026
Alternative Splicing GalleryENSG00000279891
Gene ExpressionFLJ42393 [ NCBI-GEO ]   FLJ42393 [ EBI - ARRAY_EXPRESS ]   FLJ42393 [ SEEK ]   FLJ42393 [ MEM ]
Gene Expression Viewer (FireBrowse)FLJ42393 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401105
GTEX Portal (Tissue expression)FLJ42393
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FLJ42393
DMDM Disease mutations401105
Blocks (Seattle)FLJ42393
Human Protein AtlasENSG00000279891
HPRD16962
IPIIPI00432702   IPI00410553   
Protein Interaction databases
FunCoupENSG00000279891
BioGRIDFLJ42393
STRING (EMBL)FLJ42393
ZODIACFLJ42393
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease401105
BioCentury BCIQFLJ42393
ClinGenFLJ42393
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401105
Clinical trialFLJ42393
Miscellaneous
canSAR (ICR)FLJ42393 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLJ42393
EVEXFLJ42393
GoPubMedFLJ42393
iHOPFLJ42393
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:49:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.