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FLRT3 (fibronectin leucine rich transmembrane protein 3)

Identity

Other aliasHH21
HGNC (Hugo) FLRT3
LocusID (NCBI) 23767
Atlas_Id 63541
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 14304639 and ends at 14318313 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FLRT3   3762
Cards
Entrez_Gene (NCBI)FLRT3  23767  fibronectin leucine rich transmembrane protein 3
AliasesHH21
GeneCards (Weizmann)FLRT3
Ensembl hg19 (Hinxton)ENSG00000125848 [Gene_View]  chr20:14304639-14318313 [Contig_View]  FLRT3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125848 [Gene_View]  chr20:14304639-14318313 [Contig_View]  FLRT3 [Vega]
ICGC DataPortalENSG00000125848
TCGA cBioPortalFLRT3
AceView (NCBI)FLRT3
Genatlas (Paris)FLRT3
WikiGenes23767
SOURCE (Princeton)FLRT3
Genetics Home Reference (NIH)FLRT3
Genomic and cartography
GoldenPath hg19 (UCSC)FLRT3  -     chr20:14304639-14318313 -  20p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FLRT3  -     20p12.1   [Description]    (hg38-Dec_2013)
EnsemblFLRT3 - 20p12.1 [CytoView hg19]  FLRT3 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBIFLRT3 [Mapview hg19]  FLRT3 [Mapview hg38]
OMIM604808   615271   
Gene and transcription
Genbank (Entrez)AB040902 AF169677 AK027297 AK027670 AK027694
RefSeq transcript (Entrez)NM_013281 NM_198391
RefSeq genomic (Entrez)NC_000020 NC_018931 NG_033913 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)FLRT3
Cluster EST : UnigeneHs.41296 [ NCBI ]
CGAP (NCI)Hs.41296
Alternative Splicing GalleryENSG00000125848
Gene ExpressionFLRT3 [ NCBI-GEO ]   FLRT3 [ EBI - ARRAY_EXPRESS ]   FLRT3 [ SEEK ]   FLRT3 [ MEM ]
Gene Expression Viewer (FireBrowse)FLRT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23767
GTEX Portal (Tissue expression)FLRT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZU0
Splice isoforms : SwissVarQ9NZU0
PhosPhoSitePlusQ9NZU0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    FN3_dom    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)FN3 (SM00060)  LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)FLRT3
DMDM Disease mutations23767
Blocks (Seattle)FLRT3
SuperfamilyQ9NZU0
Human Protein AtlasENSG00000125848
Peptide AtlasQ9NZU0
HPRD05313
IPIIPI00002320   IPI01011428   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZU0
IntAct (EBI)Q9NZU0
FunCoupENSG00000125848
BioGRIDFLRT3
STRING (EMBL)FLRT3
ZODIACFLRT3
Ontologies - Pathways
QuickGOQ9NZU0
Ontology : AmiGOreceptor signaling protein activity  proteinaceous extracellular matrix  extracellular space  intracellular  integral component of plasma membrane  cell adhesion  axon guidance  biological_process  protein binding, bridging  intracellular signal transduction  chemorepellent activity  negative chemotaxis  
Ontology : EGO-EBIreceptor signaling protein activity  proteinaceous extracellular matrix  extracellular space  intracellular  integral component of plasma membrane  cell adhesion  axon guidance  biological_process  protein binding, bridging  intracellular signal transduction  chemorepellent activity  negative chemotaxis  
NDEx NetworkFLRT3
Atlas of Cancer Signalling NetworkFLRT3
Wikipedia pathwaysFLRT3
Orthology - Evolution
OrthoDB23767
GeneTree (enSembl)ENSG00000125848
Phylogenetic Trees/Animal Genes : TreeFamFLRT3
HOVERGENQ9NZU0
HOGENOMQ9NZU0
Homologs : HomoloGeneFLRT3
Homology/Alignments : Family Browser (UCSC)FLRT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFLRT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FLRT3
dbVarFLRT3
ClinVarFLRT3
1000_GenomesFLRT3 
Exome Variant ServerFLRT3
ExAC (Exome Aggregation Consortium)FLRT3 (select the gene name)
Genetic variants : HAPMAP23767
Genomic Variants (DGV)FLRT3 [DGVbeta]
DECIPHER (Syndromes)20:14304639-14318313  ENSG00000125848
CONAN: Copy Number AnalysisFLRT3 
Mutations
ICGC Data PortalFLRT3 
TCGA Data PortalFLRT3 
Broad Tumor PortalFLRT3
OASIS PortalFLRT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFLRT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFLRT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FLRT3
DgiDB (Drug Gene Interaction Database)FLRT3
DoCM (Curated mutations)FLRT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FLRT3 (select a term)
intoGenFLRT3
Cancer3DFLRT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604808    615271   
Orphanet3249   
MedgenFLRT3
Genetic Testing Registry FLRT3
NextProtQ9NZU0 [Medical]
TSGene23767
GENETestsFLRT3
Huge Navigator FLRT3 [HugePedia]
snp3D : Map Gene to Disease23767
BioCentury BCIQFLRT3
ClinGenFLRT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23767
Chemical/Pharm GKB GenePA28179
Clinical trialFLRT3
Miscellaneous
canSAR (ICR)FLRT3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLRT3
EVEXFLRT3
GoPubMedFLRT3
iHOPFLRT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:13 CET 2017

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