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FLVCR1-AS1 (FLVCR1 antisense RNA 1 (head to head))

Identity

Alias_namesNCRNA00292
non-protein coding RNA 292
FLVCR1 antisense RNA 1 (non-protein coding)
FLVCR1 antisense RNA 1
Alias_symbol (synonym)LQK1
Other alias
HGNC (Hugo) FLVCR1-AS1
LocusID (NCBI) 642946
Atlas_Id 63542
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 213029946 and ends at 213031480 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FLVCR1-AS1 (1q32.3) / C1orf227 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FLVCR1-AS1   39077
Cards
Entrez_Gene (NCBI)FLVCR1-AS1  642946  FLVCR1 antisense RNA 1 (head to head)
AliasesLQK1; NCRNA00292
GeneCards (Weizmann)FLVCR1-AS1
Ensembl hg19 (Hinxton)ENSG00000198468 [Gene_View]  chr1:213029946-213031480 [Contig_View]  FLVCR1-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198468 [Gene_View]  chr1:213029946-213031480 [Contig_View]  FLVCR1-AS1 [Vega]
ICGC DataPortalENSG00000198468
TCGA cBioPortalFLVCR1-AS1
AceView (NCBI)FLVCR1-AS1
Genatlas (Paris)FLVCR1-AS1
WikiGenes642946
SOURCE (Princeton)FLVCR1-AS1
Genetics Home Reference (NIH)FLVCR1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)FLVCR1-AS1  -     chr1:213029946-213031480 -  1q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FLVCR1-AS1  -     1q32.3   [Description]    (hg38-Dec_2013)
EnsemblFLVCR1-AS1 - 1q32.3 [CytoView hg19]  FLVCR1-AS1 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBIFLVCR1-AS1 [Mapview hg19]  FLVCR1-AS1 [Mapview hg38]
OMIM610864   
Gene and transcription
Genbank (Entrez)AK092887 AY030238 AY030239 HG493180 HG493181
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_028131 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)FLVCR1-AS1
Cluster EST : UnigeneHs.552649 [ NCBI ]
CGAP (NCI)Hs.552649
Alternative Splicing GalleryENSG00000198468
Gene ExpressionFLVCR1-AS1 [ NCBI-GEO ]   FLVCR1-AS1 [ EBI - ARRAY_EXPRESS ]   FLVCR1-AS1 [ SEEK ]   FLVCR1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FLVCR1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642946
GTEX Portal (Tissue expression)FLVCR1-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAF5
Splice isoforms : SwissVarQ8TAF5
PhosPhoSitePlusQ8TAF5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FLVCR1-AS1
DMDM Disease mutations642946
Blocks (Seattle)FLVCR1-AS1
SuperfamilyQ8TAF5
Human Protein AtlasENSG00000198468
Peptide AtlasQ8TAF5
IPIIPI00152052   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAF5
IntAct (EBI)Q8TAF5
FunCoupENSG00000198468
BioGRIDFLVCR1-AS1
STRING (EMBL)FLVCR1-AS1
ZODIACFLVCR1-AS1
Ontologies - Pathways
QuickGOQ8TAF5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFLVCR1-AS1
Atlas of Cancer Signalling NetworkFLVCR1-AS1
Wikipedia pathwaysFLVCR1-AS1
Orthology - Evolution
OrthoDB642946
GeneTree (enSembl)ENSG00000198468
Phylogenetic Trees/Animal Genes : TreeFamFLVCR1-AS1
HOVERGENQ8TAF5
HOGENOMQ8TAF5
Homologs : HomoloGeneFLVCR1-AS1
Homology/Alignments : Family Browser (UCSC)FLVCR1-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFLVCR1-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FLVCR1-AS1
dbVarFLVCR1-AS1
ClinVarFLVCR1-AS1
1000_GenomesFLVCR1-AS1 
Exome Variant ServerFLVCR1-AS1
ExAC (Exome Aggregation Consortium)FLVCR1-AS1 (select the gene name)
Genetic variants : HAPMAP642946
Genomic Variants (DGV)FLVCR1-AS1 [DGVbeta]
DECIPHER (Syndromes)1:213029946-213031480  ENSG00000198468
CONAN: Copy Number AnalysisFLVCR1-AS1 
Mutations
ICGC Data PortalFLVCR1-AS1 
TCGA Data PortalFLVCR1-AS1 
Broad Tumor PortalFLVCR1-AS1
OASIS PortalFLVCR1-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFLVCR1-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FLVCR1-AS1
DgiDB (Drug Gene Interaction Database)FLVCR1-AS1
DoCM (Curated mutations)FLVCR1-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FLVCR1-AS1 (select a term)
intoGenFLVCR1-AS1
Cancer3DFLVCR1-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610864   
Orphanet
MedgenFLVCR1-AS1
Genetic Testing Registry FLVCR1-AS1
NextProtQ8TAF5 [Medical]
TSGene642946
GENETestsFLVCR1-AS1
Huge Navigator FLVCR1-AS1 [HugePedia]
snp3D : Map Gene to Disease642946
BioCentury BCIQFLVCR1-AS1
ClinGenFLVCR1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642946
Clinical trialFLVCR1-AS1
Miscellaneous
canSAR (ICR)FLVCR1-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLVCR1-AS1
EVEXFLVCR1-AS1
GoPubMedFLVCR1-AS1
iHOPFLVCR1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:14 CET 2017

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