Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FLVCR1 (feline leukemia virus subgroup C cellular receptor 1)

Identity

Alias_namesAXPC1
ataxia
Alias_symbol (synonym)FLVCR
MFSD7B
PCA
Other aliasPCARP
HGNC (Hugo) FLVCR1
LocusID (NCBI) 28982
Atlas_Id 40613
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212858255 and ends at 212899363 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FLVCR1 (1q32.3) / CDC42BPA (1q42.13)QTRTD1 () / FLVCR1 (1q32.3)RPS6KC1 (1q32.3) / FLVCR1 (1q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FLVCR1   24682
Cards
Entrez_Gene (NCBI)FLVCR1  28982  feline leukemia virus subgroup C cellular receptor 1
AliasesAXPC1; FLVCR; MFSD7B; PCA; 
PCARP
GeneCards (Weizmann)FLVCR1
Ensembl hg19 (Hinxton)ENSG00000162769 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162769 [Gene_View]  chr1:212858255-212899363 [Contig_View]  FLVCR1 [Vega]
ICGC DataPortalENSG00000162769
TCGA cBioPortalFLVCR1
AceView (NCBI)FLVCR1
Genatlas (Paris)FLVCR1
WikiGenes28982
SOURCE (Princeton)FLVCR1
Genetics Home Reference (NIH)FLVCR1
Genomic and cartography
GoldenPath hg38 (UCSC)FLVCR1  -     chr1:212858255-212899363 +  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FLVCR1  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblFLVCR1 - 1q32.3 [CytoView hg19]  FLVCR1 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBIFLVCR1 [Mapview hg19]  FLVCR1 [Mapview hg38]
OMIM609033   609144   
Gene and transcription
Genbank (Entrez)AF118637 AK001419 AK090739 AK314481 BC048312
RefSeq transcript (Entrez)NM_014053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FLVCR1
Cluster EST : UnigeneHs.7055 [ NCBI ]
CGAP (NCI)Hs.7055
Alternative Splicing GalleryENSG00000162769
Gene ExpressionFLVCR1 [ NCBI-GEO ]   FLVCR1 [ EBI - ARRAY_EXPRESS ]   FLVCR1 [ SEEK ]   FLVCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)FLVCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28982
GTEX Portal (Tissue expression)FLVCR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5Y0
Splice isoforms : SwissVarQ9Y5Y0
PhosPhoSitePlusQ9Y5Y0
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)FLVCR1
DMDM Disease mutations28982
Blocks (Seattle)FLVCR1
SuperfamilyQ9Y5Y0
Human Protein AtlasENSG00000162769
Peptide AtlasQ9Y5Y0
HPRD16451
IPIIPI00022344   IPI00644815   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5Y0
IntAct (EBI)Q9Y5Y0
FunCoupENSG00000162769
BioGRIDFLVCR1
STRING (EMBL)FLVCR1
ZODIACFLVCR1
Ontologies - Pathways
QuickGOQ9Y5Y0
Ontology : AmiGOblood vessel development  in utero embryonic development  transporter activity  protein binding  mitochondrion  plasma membrane  integral component of plasma membrane  transport  mitochondrial transport  cellular iron ion homeostasis  multicellular organism development  heme transporter activity  heme transporter activity  heme transporter activity  heme transport  erythrocyte differentiation  mitochondrial membrane  multicellular organism growth  embryonic digit morphogenesis  erythrocyte maturation  regulation of organ growth  spleen development  embryonic skeletal system morphogenesis  transmembrane transport  head morphogenesis  heme export  
Ontology : EGO-EBIblood vessel development  in utero embryonic development  transporter activity  protein binding  mitochondrion  plasma membrane  integral component of plasma membrane  transport  mitochondrial transport  cellular iron ion homeostasis  multicellular organism development  heme transporter activity  heme transporter activity  heme transporter activity  heme transport  erythrocyte differentiation  mitochondrial membrane  multicellular organism growth  embryonic digit morphogenesis  erythrocyte maturation  regulation of organ growth  spleen development  embryonic skeletal system morphogenesis  transmembrane transport  head morphogenesis  heme export  
NDEx NetworkFLVCR1
Atlas of Cancer Signalling NetworkFLVCR1
Wikipedia pathwaysFLVCR1
Orthology - Evolution
OrthoDB28982
GeneTree (enSembl)ENSG00000162769
Phylogenetic Trees/Animal Genes : TreeFamFLVCR1
HOVERGENQ9Y5Y0
HOGENOMQ9Y5Y0
Homologs : HomoloGeneFLVCR1
Homology/Alignments : Family Browser (UCSC)FLVCR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFLVCR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FLVCR1
dbVarFLVCR1
ClinVarFLVCR1
1000_GenomesFLVCR1 
Exome Variant ServerFLVCR1
ExAC (Exome Aggregation Consortium)FLVCR1 (select the gene name)
Genetic variants : HAPMAP28982
Genomic Variants (DGV)FLVCR1 [DGVbeta]
DECIPHERFLVCR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFLVCR1 
Mutations
ICGC Data PortalFLVCR1 
TCGA Data PortalFLVCR1 
Broad Tumor PortalFLVCR1
OASIS PortalFLVCR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFLVCR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFLVCR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch FLVCR1
DgiDB (Drug Gene Interaction Database)FLVCR1
DoCM (Curated mutations)FLVCR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FLVCR1 (select a term)
intoGenFLVCR1
Cancer3DFLVCR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609033    609144   
Orphanet11809   
MedgenFLVCR1
Genetic Testing Registry FLVCR1
NextProtQ9Y5Y0 [Medical]
TSGene28982
GENETestsFLVCR1
Target ValidationFLVCR1
Huge Navigator FLVCR1 [HugePedia]
snp3D : Map Gene to Disease28982
BioCentury BCIQFLVCR1
ClinGenFLVCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28982
Chemical/Pharm GKB GenePA162388695
Clinical trialFLVCR1
Miscellaneous
canSAR (ICR)FLVCR1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLVCR1
EVEXFLVCR1
GoPubMedFLVCR1
iHOPFLVCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:06 CEST 2017

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