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FLVCR2 (feline leukemia virus subgroup C cellular receptor family member 2)

Identity

Alias_namesC14orf58
chromosome 14 open reading frame 58
feline leukemia virus subgroup C cellular receptor 2
feline leukemia virus subgroup C cellular receptor family, member 2
Alias_symbol (synonym)FLJ20371
MFSD7C
Other aliasCCT
EPV
FLVCRL14q
PVHH
HGNC (Hugo) FLVCR2
LocusID (NCBI) 55640
Atlas_Id 47618
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 75605462 and ends at 75648169 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FLVCR2 (14q24.3) / BATF (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FLVCR2   20105
Cards
Entrez_Gene (NCBI)FLVCR2  55640  feline leukemia virus subgroup C cellular receptor family member 2
AliasesC14orf58; CCT; EPV; FLVCRL14q; 
MFSD7C; PVHH
GeneCards (Weizmann)FLVCR2
Ensembl hg19 (Hinxton)ENSG00000119686 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119686 [Gene_View]  chr14:75605462-75648169 [Contig_View]  FLVCR2 [Vega]
ICGC DataPortalENSG00000119686
TCGA cBioPortalFLVCR2
AceView (NCBI)FLVCR2
Genatlas (Paris)FLVCR2
WikiGenes55640
SOURCE (Princeton)FLVCR2
Genetics Home Reference (NIH)FLVCR2
Genomic and cartography
GoldenPath hg38 (UCSC)FLVCR2  -     chr14:75605462-75648169 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FLVCR2  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblFLVCR2 - 14q24.3 [CytoView hg19]  FLVCR2 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIFLVCR2 [Mapview hg19]  FLVCR2 [Mapview hg38]
OMIM225790   610865   
Gene and transcription
Genbank (Entrez)AF456126 AK000378 AK027804 AK297002 AY260572
RefSeq transcript (Entrez)NM_001195283 NM_017791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FLVCR2
Cluster EST : UnigeneHs.509966 [ NCBI ]
CGAP (NCI)Hs.509966
Alternative Splicing GalleryENSG00000119686
Gene ExpressionFLVCR2 [ NCBI-GEO ]   FLVCR2 [ EBI - ARRAY_EXPRESS ]   FLVCR2 [ SEEK ]   FLVCR2 [ MEM ]
Gene Expression Viewer (FireBrowse)FLVCR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55640
GTEX Portal (Tissue expression)FLVCR2
Human Protein AtlasENSG00000119686-FLVCR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPI3
Splice isoforms : SwissVarQ9UPI3
PhosPhoSitePlusQ9UPI3
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)FLVCR2
DMDM Disease mutations55640
Blocks (Seattle)FLVCR2
SuperfamilyQ9UPI3
Human Protein Atlas [tissue]ENSG00000119686-FLVCR2 [tissue]
Peptide AtlasQ9UPI3
HPRD12654
IPIIPI00100520   IPI01025053   IPI01025095   IPI01024736   IPI01024835   IPI01024842   IPI01026404   IPI00976985   IPI00744884   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPI3
IntAct (EBI)Q9UPI3
FunCoupENSG00000119686
BioGRIDFLVCR2
STRING (EMBL)FLVCR2
ZODIACFLVCR2
Ontologies - Pathways
QuickGOQ9UPI3
Ontology : AmiGOplasma membrane  heme transporter activity  heme transport  integral component of membrane  heme binding  transmembrane transport  
Ontology : EGO-EBIplasma membrane  heme transporter activity  heme transport  integral component of membrane  heme binding  transmembrane transport  
NDEx NetworkFLVCR2
Atlas of Cancer Signalling NetworkFLVCR2
Wikipedia pathwaysFLVCR2
Orthology - Evolution
OrthoDB55640
GeneTree (enSembl)ENSG00000119686
Phylogenetic Trees/Animal Genes : TreeFamFLVCR2
HOVERGENQ9UPI3
HOGENOMQ9UPI3
Homologs : HomoloGeneFLVCR2
Homology/Alignments : Family Browser (UCSC)FLVCR2
Gene fusions - Rearrangements
Fusion: Tumor Portal FLVCR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFLVCR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FLVCR2
dbVarFLVCR2
ClinVarFLVCR2
1000_GenomesFLVCR2 
Exome Variant ServerFLVCR2
ExAC (Exome Aggregation Consortium)ENSG00000119686
GNOMAD BrowserENSG00000119686
Genetic variants : HAPMAP55640
Genomic Variants (DGV)FLVCR2 [DGVbeta]
DECIPHERFLVCR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFLVCR2 
Mutations
ICGC Data PortalFLVCR2 
TCGA Data PortalFLVCR2 
Broad Tumor PortalFLVCR2
OASIS PortalFLVCR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFLVCR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFLVCR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch FLVCR2
DgiDB (Drug Gene Interaction Database)FLVCR2
DoCM (Curated mutations)FLVCR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FLVCR2 (select a term)
intoGenFLVCR2
Cancer3DFLVCR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM225790    610865   
Orphanet18946   
MedgenFLVCR2
Genetic Testing Registry FLVCR2
NextProtQ9UPI3 [Medical]
TSGene55640
GENETestsFLVCR2
Target ValidationFLVCR2
Huge Navigator FLVCR2 [HugePedia]
snp3D : Map Gene to Disease55640
BioCentury BCIQFLVCR2
ClinGenFLVCR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55640
Chemical/Pharm GKB GenePA162388720
Clinical trialFLVCR2
Miscellaneous
canSAR (ICR)FLVCR2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLVCR2
EVEXFLVCR2
GoPubMedFLVCR2
iHOPFLVCR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:50:13 CET 2017

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