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FLYWCH1 (FLYWCH-type zinc finger 1)

Identity

Alias_symbol (synonym)DKFZp761A132
Other alias-
HGNC (Hugo) FLYWCH1
LocusID (NCBI) 84256
Atlas_Id 63543
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2911979 and ends at 2951208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FLYWCH1 (16p13.3) / FAR1 (11p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FLYWCH1   25404
Cards
Entrez_Gene (NCBI)FLYWCH1  84256  FLYWCH-type zinc finger 1
Aliases
GeneCards (Weizmann)FLYWCH1
Ensembl hg19 (Hinxton)ENSG00000059122 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000059122 [Gene_View]  chr16:2911979-2951208 [Contig_View]  FLYWCH1 [Vega]
ICGC DataPortalENSG00000059122
TCGA cBioPortalFLYWCH1
AceView (NCBI)FLYWCH1
Genatlas (Paris)FLYWCH1
WikiGenes84256
SOURCE (Princeton)FLYWCH1
Genetics Home Reference (NIH)FLYWCH1
Genomic and cartography
GoldenPath hg38 (UCSC)FLYWCH1  -     chr16:2911979-2951208 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FLYWCH1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblFLYWCH1 - 16p13.3 [CytoView hg19]  FLYWCH1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIFLYWCH1 [Mapview hg19]  FLYWCH1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB046772 AK026885 AK055777 AK057022 AK092434
RefSeq transcript (Entrez)NM_001308068 NM_020912 NM_032296
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FLYWCH1
Cluster EST : UnigeneHs.655321 [ NCBI ]
CGAP (NCI)Hs.655321
Alternative Splicing GalleryENSG00000059122
Gene ExpressionFLYWCH1 [ NCBI-GEO ]   FLYWCH1 [ EBI - ARRAY_EXPRESS ]   FLYWCH1 [ SEEK ]   FLYWCH1 [ MEM ]
Gene Expression Viewer (FireBrowse)FLYWCH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84256
GTEX Portal (Tissue expression)FLYWCH1
Human Protein AtlasENSG00000059122-FLYWCH1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VC44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VC44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VC44
Splice isoforms : SwissVarQ4VC44
PhosPhoSitePlusQ4VC44
Domains : Interpro (EBI)FLYWCH_N    Znf_FLYWCH   
Domain families : Pfam (Sanger)FLYWCH (PF04500)    FLYWCH_N (PF15423)   
Domain families : Pfam (NCBI)pfam04500    pfam15423   
Conserved Domain (NCBI)FLYWCH1
DMDM Disease mutations84256
Blocks (Seattle)FLYWCH1
PDB (SRS)2RPR   
PDB (PDBSum)2RPR   
PDB (IMB)2RPR   
PDB (RSDB)2RPR   
Structural Biology KnowledgeBase2RPR   
SCOP (Structural Classification of Proteins)2RPR   
CATH (Classification of proteins structures)2RPR   
SuperfamilyQ4VC44
Human Protein Atlas [tissue]ENSG00000059122-FLYWCH1 [tissue]
Peptide AtlasQ4VC44
HPRD13222
IPIIPI00879024   IPI00556169   IPI00743475   IPI00879450   IPI00444601   IPI00902648   IPI00642018   
Protein Interaction databases
DIP (DOE-UCLA)Q4VC44
IntAct (EBI)Q4VC44
FunCoupENSG00000059122
BioGRIDFLYWCH1
STRING (EMBL)FLYWCH1
ZODIACFLYWCH1
Ontologies - Pathways
QuickGOQ4VC44
Ontology : AmiGODNA binding  nucleus  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  metal ion binding  
NDEx NetworkFLYWCH1
Atlas of Cancer Signalling NetworkFLYWCH1
Wikipedia pathwaysFLYWCH1
Orthology - Evolution
OrthoDB84256
GeneTree (enSembl)ENSG00000059122
Phylogenetic Trees/Animal Genes : TreeFamFLYWCH1
HOVERGENQ4VC44
HOGENOMQ4VC44
Homologs : HomoloGeneFLYWCH1
Homology/Alignments : Family Browser (UCSC)FLYWCH1
Gene fusions - Rearrangements
Tumor Fusion PortalFLYWCH1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFLYWCH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FLYWCH1
dbVarFLYWCH1
ClinVarFLYWCH1
1000_GenomesFLYWCH1 
Exome Variant ServerFLYWCH1
ExAC (Exome Aggregation Consortium)ENSG00000059122
GNOMAD BrowserENSG00000059122
Genetic variants : HAPMAP84256
Genomic Variants (DGV)FLYWCH1 [DGVbeta]
DECIPHERFLYWCH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFLYWCH1 
Mutations
ICGC Data PortalFLYWCH1 
TCGA Data PortalFLYWCH1 
Broad Tumor PortalFLYWCH1
OASIS PortalFLYWCH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFLYWCH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFLYWCH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FLYWCH1
DgiDB (Drug Gene Interaction Database)FLYWCH1
DoCM (Curated mutations)FLYWCH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FLYWCH1 (select a term)
intoGenFLYWCH1
Cancer3DFLYWCH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFLYWCH1
MedgenFLYWCH1
Genetic Testing Registry FLYWCH1
NextProtQ4VC44 [Medical]
TSGene84256
GENETestsFLYWCH1
Target ValidationFLYWCH1
Huge Navigator FLYWCH1 [HugePedia]
snp3D : Map Gene to Disease84256
BioCentury BCIQFLYWCH1
ClinGenFLYWCH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84256
Chemical/Pharm GKB GenePA142671760
Clinical trialFLYWCH1
Miscellaneous
canSAR (ICR)FLYWCH1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLYWCH1
EVEXFLYWCH1
GoPubMedFLYWCH1
iHOPFLYWCH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:33:15 CET 2017

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