Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FMC1 (formation of mitochondrial complex V assembly factor 1 homolog)

Identity

Alias_namesC7orf55
chromosome 7 open reading frame 55
formation of mitochondrial complex V assembly factor 1
Alias_symbol (synonym)HSPC268
Other alias
HGNC (Hugo) FMC1
LocusID (NCBI) 154791
Atlas_Id 56049
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 139341132 and ends at 139346319 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FMC1   26946
Cards
Entrez_Gene (NCBI)FMC1  154791  formation of mitochondrial complex V assembly factor 1 homolog
AliasesC7orf55; HSPC268
GeneCards (Weizmann)FMC1
Ensembl hg19 (Hinxton)ENSG00000164898 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164898 [Gene_View]  chr7:139341132-139346319 [Contig_View]  FMC1 [Vega]
ICGC DataPortalENSG00000164898
TCGA cBioPortalFMC1
AceView (NCBI)FMC1
Genatlas (Paris)FMC1
WikiGenes154791
SOURCE (Princeton)FMC1
Genetics Home Reference (NIH)FMC1
Genomic and cartography
GoldenPath hg38 (UCSC)FMC1  -     chr7:139341132-139346319 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FMC1  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblFMC1 - 7q34 [CytoView hg19]  FMC1 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIFMC1 [Mapview hg19]  FMC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA393224 AA620996 AF161386 AK093018 AM393147
RefSeq transcript (Entrez)NM_197964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FMC1
Cluster EST : UnigeneHs.718441 [ NCBI ]
CGAP (NCI)Hs.718441
Alternative Splicing GalleryENSG00000164898
Gene ExpressionFMC1 [ NCBI-GEO ]   FMC1 [ EBI - ARRAY_EXPRESS ]   FMC1 [ SEEK ]   FMC1 [ MEM ]
Gene Expression Viewer (FireBrowse)FMC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154791
GTEX Portal (Tissue expression)FMC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HJ9
Splice isoforms : SwissVarQ96HJ9
PhosPhoSitePlusQ96HJ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FMC1
DMDM Disease mutations154791
Blocks (Seattle)FMC1
SuperfamilyQ96HJ9
Human Protein AtlasENSG00000164898
Peptide AtlasQ96HJ9
HPRD13714
IPIIPI00418174   
Protein Interaction databases
DIP (DOE-UCLA)Q96HJ9
IntAct (EBI)Q96HJ9
FunCoupENSG00000164898
BioGRIDFMC1
STRING (EMBL)FMC1
ZODIACFMC1
Ontologies - Pathways
QuickGOQ96HJ9
Ontology : AmiGOmitochondrion  negative regulation of lipid catabolic process  regulation of type B pancreatic cell proliferation  
Ontology : EGO-EBImitochondrion  negative regulation of lipid catabolic process  regulation of type B pancreatic cell proliferation  
NDEx NetworkFMC1
Atlas of Cancer Signalling NetworkFMC1
Wikipedia pathwaysFMC1
Orthology - Evolution
OrthoDB154791
GeneTree (enSembl)ENSG00000164898
Phylogenetic Trees/Animal Genes : TreeFamFMC1
HOVERGENQ96HJ9
HOGENOMQ96HJ9
Homologs : HomoloGeneFMC1
Homology/Alignments : Family Browser (UCSC)FMC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFMC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FMC1
dbVarFMC1
ClinVarFMC1
1000_GenomesFMC1 
Exome Variant ServerFMC1
ExAC (Exome Aggregation Consortium)FMC1 (select the gene name)
Genetic variants : HAPMAP154791
Genomic Variants (DGV)FMC1 [DGVbeta]
DECIPHERFMC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFMC1 
Mutations
ICGC Data PortalFMC1 
TCGA Data PortalFMC1 
Broad Tumor PortalFMC1
OASIS PortalFMC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFMC1
BioMutasearch FMC1
DgiDB (Drug Gene Interaction Database)FMC1
DoCM (Curated mutations)FMC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FMC1 (select a term)
intoGenFMC1
Cancer3DFMC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFMC1
Genetic Testing Registry FMC1
NextProtQ96HJ9 [Medical]
TSGene154791
GENETestsFMC1
Target ValidationFMC1
Huge Navigator FMC1 [HugePedia]
snp3D : Map Gene to Disease154791
BioCentury BCIQFMC1
ClinGenFMC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154791
Chemical/Pharm GKB GenePA164717374
Clinical trialFMC1
Miscellaneous
canSAR (ICR)FMC1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFMC1
EVEXFMC1
GoPubMedFMC1
iHOPFMC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:01:21 CEST 2017

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