Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FMO6P (flavin containing monooxygenase 6 pseudogene)

Identity

Alias_namesFMO6
flavin containing monooxygenase 6
Other alias
HGNC (Hugo) FMO6P
LocusID (NCBI) 388714
Atlas_Id 63546
Location 1q24.3  [Link to chromosome band 1q24]
Location_base_pair Starts at 171106879 and ends at 171130702 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FMO6P   24024
Cards
Entrez_Gene (NCBI)FMO6P  388714  flavin containing monooxygenase 6 pseudogene
AliasesFMO6
GeneCards (Weizmann)FMO6P
Ensembl hg19 (Hinxton)ENSG00000117507 [Gene_View]  chr1:171106879-171130702 [Contig_View]  FMO6P [Vega]
Ensembl hg38 (Hinxton)ENSG00000117507 [Gene_View]  chr1:171106879-171130702 [Contig_View]  FMO6P [Vega]
ICGC DataPortalENSG00000117507
TCGA cBioPortalFMO6P
AceView (NCBI)FMO6P
Genatlas (Paris)FMO6P
WikiGenes388714
SOURCE (Princeton)FMO6P
Genetics Home Reference (NIH)FMO6P
Genomic and cartography
GoldenPath hg19 (UCSC)FMO6P  -     chr1:171106879-171130702 +  1q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FMO6P  -     1q24.3   [Description]    (hg38-Dec_2013)
EnsemblFMO6P - 1q24.3 [CytoView hg19]  FMO6P - 1q24.3 [CytoView hg38]
Mapping of homologs : NCBIFMO6P [Mapview hg19]  FMO6P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130511
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)FMO6P
Cluster EST : UnigeneHs.448988 [ NCBI ]
CGAP (NCI)Hs.448988
Alternative Splicing GalleryENSG00000117507
Gene ExpressionFMO6P [ NCBI-GEO ]   FMO6P [ EBI - ARRAY_EXPRESS ]   FMO6P [ SEEK ]   FMO6P [ MEM ]
Gene Expression Viewer (FireBrowse)FMO6P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388714
GTEX Portal (Tissue expression)FMO6P
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60774   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60774  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60774
Splice isoforms : SwissVarO60774
Catalytic activity : Enzyme1.14.13.8 [ Enzyme-Expasy ]   1.14.13.81.14.13.8 [ IntEnz-EBI ]   1.14.13.8 [ BRENDA ]   1.14.13.8 [ KEGG ]   
PhosPhoSitePlusO60774
Domains : Interpro (EBI)DiMe-aniline_mOase    Flavin_mOase    Flavin_mOase-like    Flavin_mOase_3    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)FMO-like (PF00743)   
Domain families : Pfam (NCBI)pfam00743   
Conserved Domain (NCBI)FMO6P
DMDM Disease mutations388714
Blocks (Seattle)FMO6P
SuperfamilyO60774
Human Protein AtlasENSG00000117507
Peptide AtlasO60774
HPRD18387
IPIIPI00012190   IPI00974276   
Protein Interaction databases
DIP (DOE-UCLA)O60774
IntAct (EBI)O60774
FunCoupENSG00000117507
BioGRIDFMO6P
STRING (EMBL)FMO6P
ZODIACFMO6P
Ontologies - Pathways
QuickGOO60774
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFMO6P
Atlas of Cancer Signalling NetworkFMO6P
Wikipedia pathwaysFMO6P
Orthology - Evolution
OrthoDB388714
GeneTree (enSembl)ENSG00000117507
Phylogenetic Trees/Animal Genes : TreeFamFMO6P
HOVERGENO60774
HOGENOMO60774
Homologs : HomoloGeneFMO6P
Homology/Alignments : Family Browser (UCSC)FMO6P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFMO6P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FMO6P
dbVarFMO6P
ClinVarFMO6P
1000_GenomesFMO6P 
Exome Variant ServerFMO6P
ExAC (Exome Aggregation Consortium)FMO6P (select the gene name)
Genetic variants : HAPMAP388714
Genomic Variants (DGV)FMO6P [DGVbeta]
DECIPHER (Syndromes)1:171106879-171130702  ENSG00000117507
CONAN: Copy Number AnalysisFMO6P 
Mutations
ICGC Data PortalFMO6P 
TCGA Data PortalFMO6P 
Broad Tumor PortalFMO6P
OASIS PortalFMO6P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFMO6P  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFMO6P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FMO6P
DgiDB (Drug Gene Interaction Database)FMO6P
DoCM (Curated mutations)FMO6P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FMO6P (select a term)
intoGenFMO6P
Cancer3DFMO6P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFMO6P
Genetic Testing Registry FMO6P
NextProtO60774 [Medical]
TSGene388714
GENETestsFMO6P
Huge Navigator FMO6P [HugePedia]
snp3D : Map Gene to Disease388714
BioCentury BCIQFMO6P
ClinGenFMO6P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388714
Chemical/Pharm GKB GenePA142671753
Clinical trialFMO6P
Miscellaneous
canSAR (ICR)FMO6P (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFMO6P
EVEXFMO6P
GoPubMedFMO6P
iHOPFMO6P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:14 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.