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FMR1NB (FMR1 neighbor)

Identity

Alias (NCBI)CT37
NY-SAR-35
NYSAR35
HGNC (Hugo) FMR1NB
HGNC Alias symbFLJ25736
NY-SAR-35
CT37
HGNC Alias namecancer/testis antigen 37
HGNC Previous namefragile X mental retardation 1 neighbor
LocusID (NCBI) 158521
Atlas_Id 52368
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 147981337 and ends at 148026664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NCOR2 (12q24.31)::FMR1NB (Xq27.3)NCOR2 12q24.31::FMR1NB Xq27.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FMR1NB   26372
Cards
Entrez_Gene (NCBI)FMR1NB    FMR1 neighbor
AliasesCT37; NY-SAR-35; NYSAR35
GeneCards (Weizmann)FMR1NB
Ensembl hg19 (Hinxton)ENSG00000176988 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176988 [Gene_View]  ENSG00000176988 [Sequence]  chrX:147981337-148026664 [Contig_View]  FMR1NB [Vega]
ICGC DataPortalENSG00000176988
TCGA cBioPortalFMR1NB
AceView (NCBI)FMR1NB
Genatlas (Paris)FMR1NB
SOURCE (Princeton)FMR1NB
Genetics Home Reference (NIH)FMR1NB
Genomic and cartography
GoldenPath hg38 (UCSC)FMR1NB  -     chrX:147981337-148026664 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FMR1NB  -     Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPathFMR1NB - Xq27.3 [CytoView hg19]  FMR1NB - Xq27.3 [CytoView hg38]
ImmunoBaseENSG00000176988
Genome Data Viewer NCBIFMR1NB [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK098602 AY211917 BC034320
RefSeq transcript (Entrez)NM_152578
Consensus coding sequences : CCDS (NCBI)FMR1NB
Gene ExpressionFMR1NB [ NCBI-GEO ]   FMR1NB [ EBI - ARRAY_EXPRESS ]   FMR1NB [ SEEK ]   FMR1NB [ MEM ]
Gene Expression Viewer (FireBrowse)FMR1NB [ Firebrowse - Broad ]
GenevisibleExpression of FMR1NB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158521
GTEX Portal (Tissue expression)FMR1NB
Human Protein AtlasENSG00000176988-FMR1NB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0W7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0W7
PhosPhoSitePlusQ8N0W7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FMR1NB
SuperfamilyQ8N0W7
AlphaFold pdb e-kbQ8N0W7   
Human Protein Atlas [tissue]ENSG00000176988-FMR1NB [tissue]
HPRD06546
Protein Interaction databases
DIP (DOE-UCLA)Q8N0W7
IntAct (EBI)Q8N0W7
BioGRIDFMR1NB
STRING (EMBL)FMR1NB
ZODIACFMR1NB
Ontologies - Pathways
QuickGOQ8N0W7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFMR1NB
Atlas of Cancer Signalling NetworkFMR1NB
Wikipedia pathwaysFMR1NB
Orthology - Evolution
OrthoDB158521
GeneTree (enSembl)ENSG00000176988
Phylogenetic Trees/Animal Genes : TreeFamFMR1NB
Homologs : HomoloGeneFMR1NB
Homology/Alignments : Family Browser (UCSC)FMR1NB
Gene fusions - Rearrangements
Fusion : MitelmanNCOR2::FMR1NB [12q24.31/Xq27.3]  
Fusion : QuiverFMR1NB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFMR1NB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FMR1NB
dbVarFMR1NB
ClinVarFMR1NB
MonarchFMR1NB
1000_GenomesFMR1NB 
Exome Variant ServerFMR1NB
GNOMAD BrowserENSG00000176988
Varsome BrowserFMR1NB
ACMGFMR1NB variants
VarityQ8N0W7
Genomic Variants (DGV)FMR1NB [DGVbeta]
DECIPHERFMR1NB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFMR1NB 
Mutations
ICGC Data PortalFMR1NB 
TCGA Data PortalFMR1NB 
Broad Tumor PortalFMR1NB
OASIS PortalFMR1NB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFMR1NB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFMR1NB
Mutations and Diseases : HGMDFMR1NB
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFMR1NB
DgiDB (Drug Gene Interaction Database)FMR1NB
DoCM (Curated mutations)FMR1NB
CIViC (Clinical Interpretations of Variants in Cancer)FMR1NB
Cancer3DFMR1NB
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFMR1NB
MedgenFMR1NB
Genetic Testing Registry FMR1NB
NextProtQ8N0W7 [Medical]
GENETestsFMR1NB
Target ValidationFMR1NB
Huge Navigator FMR1NB [HugePedia]
ClinGenFMR1NB
Clinical trials, drugs, therapy
MyCancerGenomeFMR1NB
Protein Interactions : CTDFMR1NB
Pharm GKB GenePA134927784
PharosQ8N0W7
Clinical trialFMR1NB
Miscellaneous
canSAR (ICR)FMR1NB
HarmonizomeFMR1NB
ARCHS4FMR1NB
DataMed IndexFMR1NB
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFMR1NB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:33:54 CET 2022

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