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FMR1NB (FMR1 neighbor)

Identity

Alias_symbol (synonym)FLJ25736
NY-SAR-35
CT37
Other aliasNYSAR35
HGNC (Hugo) FMR1NB
LocusID (NCBI) 158521
Atlas_Id 52368
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 147981329 and ends at 148026667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCOR2 (12q24.31) / FMR1NB (Xq27.3)NCOR2 12q24.31 / FMR1NB Xq27.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FMR1NB   26372
Cards
Entrez_Gene (NCBI)FMR1NB  158521  FMR1 neighbor
AliasesCT37; NY-SAR-35; NYSAR35
GeneCards (Weizmann)FMR1NB
Ensembl hg19 (Hinxton)ENSG00000176988 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176988 [Gene_View]  chrX:147981329-148026667 [Contig_View]  FMR1NB [Vega]
ICGC DataPortalENSG00000176988
TCGA cBioPortalFMR1NB
AceView (NCBI)FMR1NB
Genatlas (Paris)FMR1NB
WikiGenes158521
SOURCE (Princeton)FMR1NB
Genetics Home Reference (NIH)FMR1NB
Genomic and cartography
GoldenPath hg38 (UCSC)FMR1NB  -     chrX:147981329-148026667 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FMR1NB  -     Xq27.3   [Description]    (hg19-Feb_2009)
EnsemblFMR1NB - Xq27.3 [CytoView hg19]  FMR1NB - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBIFMR1NB [Mapview hg19]  FMR1NB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098602 AY211917 BC034320 HQ447121
RefSeq transcript (Entrez)NM_152578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FMR1NB
Cluster EST : UnigeneHs.128580 [ NCBI ]
CGAP (NCI)Hs.128580
Alternative Splicing GalleryENSG00000176988
Gene ExpressionFMR1NB [ NCBI-GEO ]   FMR1NB [ EBI - ARRAY_EXPRESS ]   FMR1NB [ SEEK ]   FMR1NB [ MEM ]
Gene Expression Viewer (FireBrowse)FMR1NB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158521
GTEX Portal (Tissue expression)FMR1NB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0W7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0W7
Splice isoforms : SwissVarQ8N0W7
PhosPhoSitePlusQ8N0W7
Domains : Interpro (EBI)P_trefoil_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FMR1NB
DMDM Disease mutations158521
Blocks (Seattle)FMR1NB
SuperfamilyQ8N0W7
Human Protein AtlasENSG00000176988
Peptide AtlasQ8N0W7
HPRD06546
IPIIPI00166099   IPI00984023   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0W7
IntAct (EBI)Q8N0W7
FunCoupENSG00000176988
BioGRIDFMR1NB
STRING (EMBL)FMR1NB
ZODIACFMR1NB
Ontologies - Pathways
QuickGOQ8N0W7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFMR1NB
Atlas of Cancer Signalling NetworkFMR1NB
Wikipedia pathwaysFMR1NB
Orthology - Evolution
OrthoDB158521
GeneTree (enSembl)ENSG00000176988
Phylogenetic Trees/Animal Genes : TreeFamFMR1NB
HOVERGENQ8N0W7
HOGENOMQ8N0W7
Homologs : HomoloGeneFMR1NB
Homology/Alignments : Family Browser (UCSC)FMR1NB
Gene fusions - Rearrangements
Fusion : MitelmanNCOR2/FMR1NB [12q24.31/Xq27.3]  [t(X;12)(q27;q24)]  
Fusion: TCGANCOR2 12q24.31 FMR1NB Xq27.3 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFMR1NB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FMR1NB
dbVarFMR1NB
ClinVarFMR1NB
1000_GenomesFMR1NB 
Exome Variant ServerFMR1NB
ExAC (Exome Aggregation Consortium)FMR1NB (select the gene name)
Genetic variants : HAPMAP158521
Genomic Variants (DGV)FMR1NB [DGVbeta]
DECIPHERFMR1NB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFMR1NB 
Mutations
ICGC Data PortalFMR1NB 
TCGA Data PortalFMR1NB 
Broad Tumor PortalFMR1NB
OASIS PortalFMR1NB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFMR1NB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFMR1NB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FMR1NB
DgiDB (Drug Gene Interaction Database)FMR1NB
DoCM (Curated mutations)FMR1NB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FMR1NB (select a term)
intoGenFMR1NB
Cancer3DFMR1NB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFMR1NB
Genetic Testing Registry FMR1NB
NextProtQ8N0W7 [Medical]
TSGene158521
GENETestsFMR1NB
Target ValidationFMR1NB
Huge Navigator FMR1NB [HugePedia]
snp3D : Map Gene to Disease158521
BioCentury BCIQFMR1NB
ClinGenFMR1NB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158521
Chemical/Pharm GKB GenePA134927784
Clinical trialFMR1NB
Miscellaneous
canSAR (ICR)FMR1NB (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFMR1NB
EVEXFMR1NB
GoPubMedFMR1NB
iHOPFMR1NB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:53:36 CEST 2017

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