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FN1 (fibronectin 1)

Identity

Alias (NCBI)CIG
ED-B
FINC
FN
FNZ
GFND
GFND2
LETS
MSF
SMDCF
HGNC (Hugo) FN1
HGNC Alias symbMSF
CIG
LETS
GFND2
FINC
HGNC Alias namemigration-stimulating factor
 cold-insoluble globulin
LocusID (NCBI) 2335
Atlas_Id 40617
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 215360451 and ends at 215436068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGO4 (1p34.3) / FN1 (2q35)APPL2 (12q23.3) / FN1 (2q35)ARNTL (11p15.2) / FN1 (2q35)
CCDC112 (5q22.3) / FN1 (2q35)CCDC84 (11q23.3) / FN1 (2q35)CDC27 (17q21.32) / FN1 (2q35)
CSNK1D (17q25.3) / FN1 (2q35)DENND5A (11p15.4) / FN1 (2q35)ERCC1 (19q13.32) / FN1 (2q35)
FN1 (2q35) / ACVR2A (2q22.3)FN1 (2q35) / ALK (2p23.2)FN1 (2q35) / APOD (3q29)
FN1 (2q35) / CCDC80 (3q13.2)FN1 (2q35) / CD52 (1p36.11)FN1 (2q35) / CDKN1B (12p13.1)
FN1 (2q35) / CSH2 (17q23.3)FN1 (2q35) / DAGLB (7p22.1)FN1 (2q35) / FGFR1 (8p11.23)
FN1 (2q35) / FN1 (2q35)FN1 (2q35) / HMGN1 (21q22.2)FN1 (2q35) / IQCG (3q29)
FN1 (2q35) / KMT2A (11q23.3)FN1 (2q35) / LDOC1L (22q13.31)FN1 (2q35) / LYN (8q12.1)
FN1 (2q35) / MAGEA8 (Xq28)FN1 (2q35) / MED22 (9q34.2)FN1 (2q35) / NFX1 (9p13.3)
FN1 (2q35) / OPHN1 (Xq12)FN1 (2q35) / PIGL (17p11.2)FN1 (2q35) / RNH1 (11p15.5)
FN1 (2q35) / TBC1D8B (Xq22.3)FN1 (2q35) / TONSL (8q24.3)FN1 (2q35) / YIPF4 (2p22.3)
FN1 (2q35) / YWHAG (7q11.23)FN1 (2q35) / ZSCAN12 (6p22.1)FUT3 (19p13.3) / FN1 (2q35)
KMT2A (11q23.3) / FN1 (2q35)MCAM (11q23.3) / FN1 (2q35)MUC5B (11p15.5) / FN1 (2q35)
MYT1L (2p25.3) / FN1 (2q35)NEMF (14q21.3) / FN1 (2q35)NUP98 (11p15.4) / FN1 (2q35)
PMS1 (2q32.2) / FN1 (2q35)PTPRS (19p13.3) / FN1 (2q35)RACK1 (5q35.3) / FN1 (2q35)
SLC20A1 (2q13) / FN1 (2q35)SMC3 (10q25.2) / FN1 (2q35)SNORD6 (11q21) / FN1 (2q35)
SPARC (5q33.1) / FN1 (2q35)TBC1D20 (20p13) / FN1 (2q35)TFRC (3q29) / FN1 (2q35)
TNPO3 (7q32.1) / FN1 (2q35)VASH1 (14q24.3) / FN1 (2q35)VWF (12p13.31) / FN1 (2q35)
cytochrome_b () / FN1 (2q35)FN1 2q35 / ALK 2p23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;19)(q13;p13) FSTL3/CCND1


External links

Nomenclature
HGNC (Hugo)FN1   3778
Cards
Entrez_Gene (NCBI)FN1    fibronectin 1
AliasesCIG; ED-B; FINC; FN; 
FNZ; GFND; GFND2; LETS; MSF; SMDCF
GeneCards (Weizmann)FN1
Ensembl hg19 (Hinxton)ENSG00000115414 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115414 [Gene_View]  ENSG00000115414 [Sequence]  chr2:215360451-215436068 [Contig_View]  FN1 [Vega]
ICGC DataPortalENSG00000115414
TCGA cBioPortalFN1
AceView (NCBI)FN1
Genatlas (Paris)FN1
SOURCE (Princeton)FN1
Genetics Home Reference (NIH)FN1
Genomic and cartography
GoldenPath hg38 (UCSC)FN1  -     chr2:215360451-215436068 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FN1  -     2q35   [Description]    (hg19-Feb_2009)
GoldenPathFN1 - 2q35 [CytoView hg19]  FN1 - 2q35 [CytoView hg38]
ImmunoBaseENSG00000115414
Genome Data Viewer NCBIFN1 [Mapview hg19]  
OMIM135600   184255   601894   
Gene and transcription
Genbank (Entrez)AB191261 AB209287 AB209840 AF130095 AF312399
RefSeq transcript (Entrez)NM_001306129 NM_001306130 NM_001306131 NM_001306132 NM_001365517 NM_001365518 NM_001365519 NM_001365520 NM_001365521 NM_001365522 NM_001365523 NM_001365524 NM_002026 NM_054034 NM_212474 NM_212475 NM_212476 NM_212478 NM_212482
Consensus coding sequences : CCDS (NCBI)FN1
Gene ExpressionFN1 [ NCBI-GEO ]   FN1 [ EBI - ARRAY_EXPRESS ]   FN1 [ SEEK ]   FN1 [ MEM ]
Gene Expression Viewer (FireBrowse)FN1 [ Firebrowse - Broad ]
GenevisibleExpression of FN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2335
GTEX Portal (Tissue expression)FN1
Human Protein AtlasENSG00000115414-FN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FN1
Human Protein Atlas [tissue]ENSG00000115414-FN1 [tissue]
HPRD00626
Protein Interaction databases
BioGRIDFN1
STRING (EMBL)FN1
ZODIACFN1
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:09:42 CEST 2021

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