Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FN3KRP (fructosamine 3 kinase related protein)

Identity

Alias (NCBI)FN3KL
HGNC (Hugo) FN3KRP
HGNC Alias symbFLJ12171
FN3KL
LocusID (NCBI) 79672
Atlas_Id 43909
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82716706 and ends at 82728013 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GOLGA2 (9q34.11) / FN3KRP (17q25.3)REV3L (6q21) / FN3KRP (17q25.3)WSB1 (17q11.1) / FN3KRP (17q25.3)
ZSWIM4 (19p13.13) / FN3KRP (17q25.3)REV3L 6q21 / FN3KRP 17q25.3WSB1 17q11.1 / FN3KRP 17q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(6;17)(q21;q25) REV3L/FN3KRP
t(11;17)(p15;q25) FN3KRP/KCNQ1
t(17;17)(q11;q25) WSB1/FN3KRP


External links

Nomenclature
HGNC (Hugo)FN3KRP   25700
Cards
Entrez_Gene (NCBI)FN3KRP    fructosamine 3 kinase related protein
AliasesFN3KL
GeneCards (Weizmann)FN3KRP
Ensembl hg19 (Hinxton)ENSG00000141560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141560 [Gene_View]  ENSG00000141560 [Sequence]  chr17:82716706-82728013 [Contig_View]  FN3KRP [Vega]
ICGC DataPortalENSG00000141560
TCGA cBioPortalFN3KRP
AceView (NCBI)FN3KRP
Genatlas (Paris)FN3KRP
SOURCE (Princeton)FN3KRP
Genetics Home Reference (NIH)FN3KRP
Genomic and cartography
GoldenPath hg38 (UCSC)FN3KRP  -     chr17:82716706-82728013 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FN3KRP  -     17q25.3   [Description]    (hg19-Feb_2009)
GoldenPathFN3KRP - 17q25.3 [CytoView hg19]  FN3KRP - 17q25.3 [CytoView hg38]
ImmunoBaseENSG00000141560
genome Data Viewer NCBIFN3KRP [Mapview hg19]  
OMIM611683   
Gene and transcription
Genbank (Entrez)AA766235 AK022233 AK293523 AK301958 AK315373
RefSeq transcript (Entrez)NM_024619
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FN3KRP
Alternative Splicing GalleryENSG00000141560
Gene ExpressionFN3KRP [ NCBI-GEO ]   FN3KRP [ EBI - ARRAY_EXPRESS ]   FN3KRP [ SEEK ]   FN3KRP [ MEM ]
Gene Expression Viewer (FireBrowse)FN3KRP [ Firebrowse - Broad ]
GenevisibleExpression of FN3KRP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79672
GTEX Portal (Tissue expression)FN3KRP
Human Protein AtlasENSG00000141560-FN3KRP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HA64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HA64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HA64
Splice isoforms : SwissVarQ9HA64
PhosPhoSitePlusQ9HA64
Domains : Interpro (EBI)Fructo-/Ketosamine-3-kinase    Kinase-like_dom_sf   
Domain families : Pfam (Sanger)Fructosamin_kin (PF03881)   
Domain families : Pfam (NCBI)pfam03881   
Conserved Domain (NCBI)FN3KRP
Blocks (Seattle)FN3KRP
SuperfamilyQ9HA64
Human Protein Atlas [tissue]ENSG00000141560-FN3KRP [tissue]
Peptide AtlasQ9HA64
HPRD13546
IPIIPI00099986   IPI00911026   
Protein Interaction databases
DIP (DOE-UCLA)Q9HA64
IntAct (EBI)Q9HA64
BioGRIDFN3KRP
STRING (EMBL)FN3KRP
ZODIACFN3KRP
Ontologies - Pathways
QuickGOQ9HA64
Ontology : AmiGOATP binding  cytosol  kinase activity  kinase activity  phosphorylation  post-translational protein modification  protein-ribulosamine 3-kinase activity  
Ontology : EGO-EBIATP binding  cytosol  kinase activity  kinase activity  phosphorylation  post-translational protein modification  protein-ribulosamine 3-kinase activity  
NDEx NetworkFN3KRP
Atlas of Cancer Signalling NetworkFN3KRP
Wikipedia pathwaysFN3KRP
Orthology - Evolution
OrthoDB79672
GeneTree (enSembl)ENSG00000141560
Phylogenetic Trees/Animal Genes : TreeFamFN3KRP
HOGENOMQ9HA64
Homologs : HomoloGeneFN3KRP
Homology/Alignments : Family Browser (UCSC)FN3KRP
Gene fusions - Rearrangements
Fusion : MitelmanREV3L/FN3KRP [6q21/17q25.3]  
Fusion : MitelmanWSB1/FN3KRP [17q11.1/17q25.3]  
Fusion PortalREV3L 6q21 FN3KRP 17q25.3 LGG
Fusion PortalWSB1 17q11.1 FN3KRP 17q25.3 LUAD
Fusion : QuiverFN3KRP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFN3KRP [hg38]
dbVarFN3KRP
ClinVarFN3KRP
MonarchFN3KRP
1000_GenomesFN3KRP 
Exome Variant ServerFN3KRP
GNOMAD BrowserENSG00000141560
Varsome BrowserFN3KRP
Genomic Variants (DGV)FN3KRP [DGVbeta]
DECIPHERFN3KRP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFN3KRP 
Mutations
ICGC Data PortalFN3KRP 
TCGA Data PortalFN3KRP 
Broad Tumor PortalFN3KRP
OASIS PortalFN3KRP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFN3KRP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFN3KRP
Mutations and Diseases : HGMDFN3KRP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FN3KRP
DgiDB (Drug Gene Interaction Database)FN3KRP
DoCM (Curated mutations)FN3KRP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FN3KRP (select a term)
intoGenFN3KRP
Cancer3DFN3KRP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611683   
Orphanet
DisGeNETFN3KRP
MedgenFN3KRP
Genetic Testing Registry FN3KRP
NextProtQ9HA64 [Medical]
GENETestsFN3KRP
Target ValidationFN3KRP
Huge Navigator FN3KRP [HugePedia]
ClinGenFN3KRP
Clinical trials, drugs, therapy
MyCancerGenomeFN3KRP
Protein Interactions : CTD
Pharm GKB GenePA164720079
PharosQ9HA64
Clinical trialFN3KRP
Miscellaneous
canSAR (ICR)FN3KRP (select the gene name)
HarmonizomeFN3KRP
DataMed IndexFN3KRP
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFN3KRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:15:59 CET 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.