Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FNBP4 (formin binding protein 4)

Identity

Alias_symbol (synonym)KIAA1014
Other aliasFBP30
HGNC (Hugo) FNBP4
LocusID (NCBI) 23360
Atlas_Id 63549
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 47716510 and ends at 47767478 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FNBP4 (11p11.2) / FNBP4 (11p11.2)FNBP4 (11p11.2) / SKP1 (5q31.1)MTCH2 (11p11.2) / FNBP4 (11p11.2)
RABGEF1 (7q11.21) / FNBP4 (11p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FNBP4   19752
Cards
Entrez_Gene (NCBI)FNBP4  23360  formin binding protein 4
AliasesFBP30
GeneCards (Weizmann)FNBP4
Ensembl hg19 (Hinxton)ENSG00000109920 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109920 [Gene_View]  ENSG00000109920 [Sequence]  chr11:47716510-47767478 [Contig_View]  FNBP4 [Vega]
ICGC DataPortalENSG00000109920
TCGA cBioPortalFNBP4
AceView (NCBI)FNBP4
Genatlas (Paris)FNBP4
WikiGenes23360
SOURCE (Princeton)FNBP4
Genetics Home Reference (NIH)FNBP4
Genomic and cartography
GoldenPath hg38 (UCSC)FNBP4  -     chr11:47716510-47767478 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FNBP4  -     11p11.2   [Description]    (hg19-Feb_2009)
FNBP4 - 11p11.2 [CytoView hg19]  FNBP4 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIFNBP4 [Mapview hg19]  FNBP4 [Mapview hg38]
OMIM615265   
Gene and transcription
Genbank (Entrez)AB023231 AI434014 AK022987 AK054636 AK095093
RefSeq transcript (Entrez)NM_001318339 NM_015308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FNBP4
Cluster EST : UnigeneHs.6834 [ NCBI ]
CGAP (NCI)Hs.6834
Alternative Splicing GalleryENSG00000109920
Gene ExpressionFNBP4 [ NCBI-GEO ]   FNBP4 [ EBI - ARRAY_EXPRESS ]   FNBP4 [ SEEK ]   FNBP4 [ MEM ]
Gene Expression Viewer (FireBrowse)FNBP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23360
GTEX Portal (Tissue expression)FNBP4
Human Protein AtlasENSG00000109920-FNBP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3X1
Splice isoforms : SwissVarQ8N3X1
PhosPhoSitePlusQ8N3X1
Domaine pattern : Prosite (Expaxy)WW_DOMAIN_1 (PS01159)    WW_DOMAIN_2 (PS50020)   
Domains : Interpro (EBI)WW_dom   
Domain families : Pfam (Sanger)WW (PF00397)   
Domain families : Pfam (NCBI)pfam00397   
Domain families : Smart (EMBL)WW (SM00456)  
Conserved Domain (NCBI)FNBP4
DMDM Disease mutations23360
Blocks (Seattle)FNBP4
SuperfamilyQ8N3X1
Human Protein Atlas [tissue]ENSG00000109920-FNBP4 [tissue]
Peptide AtlasQ8N3X1
HPRD10996
IPIIPI00170778   IPI00972964   IPI01013205   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3X1
IntAct (EBI)Q8N3X1
FunCoupENSG00000109920
BioGRIDFNBP4
STRING (EMBL)FNBP4
ZODIACFNBP4
Ontologies - Pathways
QuickGOQ8N3X1
Ontology : AmiGOprotein binding  nuclear speck  
Ontology : EGO-EBIprotein binding  nuclear speck  
NDEx NetworkFNBP4
Atlas of Cancer Signalling NetworkFNBP4
Wikipedia pathwaysFNBP4
Orthology - Evolution
OrthoDB23360
GeneTree (enSembl)ENSG00000109920
Phylogenetic Trees/Animal Genes : TreeFamFNBP4
HOGENOMQ8N3X1
Homologs : HomoloGeneFNBP4
Homology/Alignments : Family Browser (UCSC)FNBP4
Gene fusions - Rearrangements
Fusion : QuiverFNBP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNBP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNBP4
dbVarFNBP4
ClinVarFNBP4
1000_GenomesFNBP4 
Exome Variant ServerFNBP4
ExAC (Exome Aggregation Consortium)ENSG00000109920
GNOMAD BrowserENSG00000109920
Varsome BrowserFNBP4
Genetic variants : HAPMAP23360
Genomic Variants (DGV)FNBP4 [DGVbeta]
DECIPHERFNBP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFNBP4 
Mutations
ICGC Data PortalFNBP4 
TCGA Data PortalFNBP4 
Broad Tumor PortalFNBP4
OASIS PortalFNBP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFNBP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFNBP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FNBP4
DgiDB (Drug Gene Interaction Database)FNBP4
DoCM (Curated mutations)FNBP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNBP4 (select a term)
intoGenFNBP4
Cancer3DFNBP4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615265   
Orphanet
DisGeNETFNBP4
MedgenFNBP4
Genetic Testing Registry FNBP4
NextProtQ8N3X1 [Medical]
TSGene23360
GENETestsFNBP4
Target ValidationFNBP4
Huge Navigator FNBP4 [HugePedia]
snp3D : Map Gene to Disease23360
BioCentury BCIQFNBP4
ClinGenFNBP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23360
Chemical/Pharm GKB GenePA134971679
Clinical trialFNBP4
Miscellaneous
canSAR (ICR)FNBP4 (select the gene name)
DataMed IndexFNBP4
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNBP4
EVEXFNBP4
GoPubMedFNBP4
iHOPFNBP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 21 14:45:33 CET 2019
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