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FNDC10 (fibronectin type III domain containing 10)

Identity

Alias_namesC1orf233
chromosome 1 open reading frame 233
Other alias
HGNC (Hugo) FNDC10
LocusID (NCBI) 643988
Atlas_Id 78477
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1598008 and ends at 1600096 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FNDC10   42951
Cards
Entrez_Gene (NCBI)FNDC10  643988  fibronectin type III domain containing 10
AliasesC1orf233
GeneCards (Weizmann)FNDC10
Ensembl hg19 (Hinxton)ENSG00000228594 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228594 [Gene_View]  chr1:1598008-1600096 [Contig_View]  FNDC10 [Vega]
ICGC DataPortalENSG00000228594
TCGA cBioPortalFNDC10
AceView (NCBI)FNDC10
Genatlas (Paris)FNDC10
WikiGenes643988
SOURCE (Princeton)FNDC10
Genetics Home Reference (NIH)FNDC10
Genomic and cartography
GoldenPath hg38 (UCSC)FNDC10  -     chr1:1598008-1600096 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FNDC10  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblFNDC10 - 1p36.33 [CytoView hg19]  FNDC10 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIFNDC10 [Mapview hg19]  FNDC10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB188495 BC013276 BC070393 BU733865
RefSeq transcript (Entrez)NM_001242659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FNDC10
Cluster EST : UnigeneHs.528816 [ NCBI ]
CGAP (NCI)Hs.528816
Alternative Splicing GalleryENSG00000228594
Gene ExpressionFNDC10 [ NCBI-GEO ]   FNDC10 [ EBI - ARRAY_EXPRESS ]   FNDC10 [ SEEK ]   FNDC10 [ MEM ]
Gene Expression Viewer (FireBrowse)FNDC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643988
GTEX Portal (Tissue expression)FNDC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtF2Z333   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF2Z333  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF2Z333
Splice isoforms : SwissVarF2Z333
PhosPhoSitePlusF2Z333
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FNDC10
DMDM Disease mutations643988
Blocks (Seattle)FNDC10
SuperfamilyF2Z333
Human Protein AtlasENSG00000228594
Peptide AtlasF2Z333
IPIIPI00748705   
Protein Interaction databases
DIP (DOE-UCLA)F2Z333
IntAct (EBI)F2Z333
FunCoupENSG00000228594
BioGRIDFNDC10
STRING (EMBL)FNDC10
ZODIACFNDC10
Ontologies - Pathways
QuickGOF2Z333
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFNDC10
Atlas of Cancer Signalling NetworkFNDC10
Wikipedia pathwaysFNDC10
Orthology - Evolution
OrthoDB643988
GeneTree (enSembl)ENSG00000228594
Phylogenetic Trees/Animal Genes : TreeFamFNDC10
HOVERGENF2Z333
HOGENOMF2Z333
Homologs : HomoloGeneFNDC10
Homology/Alignments : Family Browser (UCSC)FNDC10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNDC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNDC10
dbVarFNDC10
ClinVarFNDC10
1000_GenomesFNDC10 
Exome Variant ServerFNDC10
ExAC (Exome Aggregation Consortium)FNDC10 (select the gene name)
Genetic variants : HAPMAP643988
Genomic Variants (DGV)FNDC10 [DGVbeta]
DECIPHERFNDC10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFNDC10 
Mutations
ICGC Data PortalFNDC10 
TCGA Data PortalFNDC10 
Broad Tumor PortalFNDC10
OASIS PortalFNDC10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFNDC10
BioMutasearch FNDC10
DgiDB (Drug Gene Interaction Database)FNDC10
DoCM (Curated mutations)FNDC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNDC10 (select a term)
intoGenFNDC10
Cancer3DFNDC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFNDC10
Genetic Testing Registry FNDC10
NextProtF2Z333 [Medical]
TSGene643988
GENETestsFNDC10
Target ValidationFNDC10
Huge Navigator FNDC10 [HugePedia]
snp3D : Map Gene to Disease643988
BioCentury BCIQFNDC10
ClinGenFNDC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643988
Chemical/Pharm GKB GenePA166049087
Clinical trialFNDC10
Miscellaneous
canSAR (ICR)FNDC10 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNDC10
EVEXFNDC10
GoPubMedFNDC10
iHOPFNDC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:49 CEST 2017

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